Cytoscape Introduction吳 信 宏 , Hsin-Hung Wu
eastc228@iis.sinica.edu.tw
Laboratory of System Biology and Network Biology
Institute of Information Science, Academic Sinica
Department of Computer Science and Information Engineering, NTU
July 23, 2009
Introduction (1/3)
Introduction - Input (2/3)
Supports many standards
Interoperability
Introduction - Layout (3/3)
Usage
Cytoscape http://www.cytoscape.org/
Java SE (5.0 or 6.0) http://java.sun.com/javase/downloads/index.jsp
Download Cytoscape (1/3)
The latest version
Download Cytoscape (2/3)
Fill in information about yourself
Download Cytoscape (3/3)
Depends on your OS
Download Java SE (1/3)
JRE
Download Java SE (2/3)
Depends on your OS
Download Java SE (3/3)
Download it~!
Start the Cytoscape
Import Data (1/3)
Different import procedure
Import Data (2/3)
Select data from files
Set the corresponding columns
Import Data (3/3)
View the Network (1/4)
View the Network (2/4)
Different layout styles
View the Network (3/4)
View the Network (4/4)
More layout setting
A Beautiful Example
Colorful ~
Try it ~SampleData
Cytoscape 2.6.3
JRE 6