Cytoscape Introduction吳 信 宏 , Hsin-Hung Wu

eastc228@iis.sinica.edu.tw

Laboratory of System Biology and Network Biology

Institute of Information Science, Academic Sinica

Department of Computer Science and Information Engineering, NTU

July 23, 2009

Introduction (1/3)

Introduction - Input (2/3)

Supports many standards

Interoperability

Introduction - Layout (3/3)

Usage

Cytoscape http://www.cytoscape.org/

Java SE (5.0 or 6.0) http://java.sun.com/javase/downloads/index.jsp

Download Cytoscape (1/3)

The latest version

Download Cytoscape (2/3)

Fill in information about yourself

Download Cytoscape (3/3)

Depends on your OS

Download Java SE (1/3)

JRE

Download Java SE (2/3)

Depends on your OS

Download Java SE (3/3)

Download it~!

Start the Cytoscape

Import Data (1/3)

Different import procedure

Import Data (2/3)

Select data from files

Set the corresponding columns

Import Data (3/3)

View the Network (1/4)

View the Network (2/4)

Different layout styles

View the Network (3/4)

View the Network (4/4)

More layout setting

A Beautiful Example

Colorful ~

Plug-in

Try it ~SampleData

Cytoscape 2.6.3

JRE 6