openEHR terminology binding
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Transcript of openEHR terminology binding
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Making openEHR
Terminology binding practice
Jussara
Rötzsch
Adapted from Ian McNicoll
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Terminology binding patterns• Direct node‐binding
– e.g. ‘Urine color’
node• Node name
e.g.. “Urine color”
– Automatically has unique internal term ‘at0007’
– Can be ‘run‐time’
coded by external term
– Can be ‘run‐time’
mapped to an external term
• Node value
e.g.. ‘Red, yellow, purple’– Unique term provided by Internal value set ‘at0009’
– External term mapped to term from Internal value set
– External term used as the value
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Direct‐binding issues
• Incomplete terminology / translation coverage – e.g.. SNOMED
– 50‐70% for histopathology• Effort
– Requires very good terminology skills• Can be challenging to choose correct bindings
– Some concepts require post‐coordination to capture correctly
– Is it worth trying to achieve complete node binding?
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“BP 120/78, sitting, large cuff”Candidate SNOMED CT term bindings:
• Blood pressure finding - ... (finding) – 392570002• Sitting blood pressure - ... (observable entity) – 163035008• Blood pressure - ... (observable entity) – 75367002• Blood pressure taking - ... (procedure) – 46973005• Diastolic blood pressure - ... (observable entity) – 271650006• O/E - blood pressure reading - On examination - blood pressure
reading (finding) – 163020007• Blood pressure cuff - ..., device (physical object) – 70665002
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Direct‐binding guidance
• Concentrate on current requirements– Archetypes and templates ‘fix’
the semantics
• Initial efforts guided by actual requirements
• More bindings can be added later as requirements
evolve
– Node bindings• Use internal value sets. Consider leaving ‘open to allow
for local variation.
• Add External terminology bindings where required and
available
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Termset‐binding issues
• Very little at Archetype‐level– Scope of the termset
binding is often too broad to
be meaningful at implementation• E.g. ‘All procedures’
in ACTION.procedure
archetype
– Very few examples of sensible termset‐bindings in international archetypes
– Much more applicable at national level• esp. National terminologies
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Termset‐binding guidance
• Almost all at Template‐level– Layered constraint approach
• All procedures– Orthopedic procedures
» Knee specialist procedures
– But generally have to provide option to override the constraint for unusual clinical situations
• e.g.. Non‐orthopedic procedure carried out in Orthopedic department.
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• Microsoft / NHS Common User Interface (CUI)
– Layered constraint with ‘termset
filters
– ‘Get‐out clause’
where constraint is too tight
Termset‐binding guidance
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Example: “Family history”
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Termset-bound to node Value: (Is_a genetic relation)444148008 | Person in family of subject
Termset-bound to node Value: (Is_a genetic relation)444148008 | Person in family of subject
Example: “Family history”
Term bound to node Name:184100006 | Patient sex (observable entity
Term bound to node Name:184100006 | Patient sex (observable entity
Term bound to node Name? 371534008 |Summary report (record artifact)? 422735006 |Summary clinical document (record artifact)
Term bound to node Name? 371534008 |Summary report (record artifact)? 422735006 |Summary clinical document (record artifact)
Term bound to node Name:408732007 | Subject relationship context (attribute)
Term bound to node Name:408732007 | Subject relationship context (attribute)
Term bound to node internal Value set:[at0004|Not known] =365873007|Gender unknown (finding)[at0004|Not known] =UNK|Gender unknown
[at0005|Male] = SNOMEDCT::248153007 | Male (finding)[at0005|Male] = KITH-SEX::M| Male
[at0006|Female] = 248152002 | Female(finding)[at0006|Female] = KITH-SEX::F | Female
Term bound to node internal Value set:[at0004|Not known] =365873007|Gender unknown (finding)[at0004|Not known] =UNK|Gender unknown
[at0005|Male] = SNOMEDCT::248153007 | Male (finding)[at0005|Male] = KITH-SEX::M| Male
[at0006|Female] = 248152002 | Female(finding)[at0006|Female] = KITH-SEX::F | Female
Termset-bound to node Value: (??????)429019009 | Finding related to biological sex
Termset-bound to node Value: (??????)429019009 | Finding related to biological sex
OR
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Assessed risk : Family history
No matches found in
SNOMED CT
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Local terminologies ‐
England
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Local terminologies ‐
Scotland