Population-specific association of genes for telomere ...
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RESEARCH ARTICLE
Population-specific association of genes for telomere-associated proteins with longevity in an Italian population
Paolina Crocco • Roberto Barale • Giuseppina Rose • Cosmeri Rizzato •
Aurelia Santoro • Francesco De Rango • Maura Carrai • Paola Fogar •
Daniela Monti • Fiammetta Biondi • Laura Bucci • Rita Ostan • Federica Tallaro •
Alberto Montesanto • Carlo-Federico Zambon • Claudio Franceschi •
Federico Canzian • Giuseppe Passarino • Daniele Campa
Received: 12 December 2014 / Accepted: 13 January 2015 / Published online: 29 January 2015
� Springer Science+Business Media Dordrecht 2015
Abstract Leukocyte telomere length (LTL) has
been observed to be hereditable and correlated with
longevity. However, contrasting results have been
reported in different populations on the value of LTL
heritability and on how biology of telomeres influ-
ences longevity. We investigated whether the vari-
ability of genes correlated to telomere maintenance is
associated with telomere length and affects longevity
in a population from Southern Italy (20–106 years).
For this purpose we analyzed thirty-one polymor-
phisms in eight telomerase-associated genes of which
twelve in the genes coding for the core enzyme (TERT
and TERC) and the remaining in genes coding for
components of the telomerase complex (TERF1,
TERF2, TERF2IP, TNKS, TNKS2 and TEP1). We
did not observe (after correcting for multiple testing)
statistically significant associations between SNPs and
LTL, possibly suggesting a low genetic influence of
the variability of these genes on LTL in the elderly. On
the other hand, we found that the variability of genes
encoding for TERF1 and TNKS2, not directly involved
in LTL, but important for keeping the integrity of the
structure, shows a significant association with longev-
ity. This suggests that the maintenance of these
chromosomal structures may be critically important
for preventing, or delaying, senescence and aging.
Such a correlation was not observed in a population
from northern Italy that we used as an independent
replication set. This discrepancy is in line with
Paolina Crocco, Roberto Barale, Giuseppe Passarino and
Daniele Campa have equally contributed to the study.
Electronic supplementary material The online version ofthis article (doi:10.1007/s10522-015-9551-6) contains supple-mentary material, which is available to authorized users.
P. Crocco � G. Rose � F. De Rango �F. Tallaro � A. Montesanto � G. Passarino (&)
Department of Biology, Ecology and Earth Science,
University of Calabria, 87036 Rende, Italy
e-mail: [email protected]
R. Barale � M. Carrai � D. Campa (&)
Department of Biology, University of Pisa, 56126 Pisa,
Italy
e-mail: [email protected]
C. Rizzato � F. CanzianGenomic Epidemiology Group, German Cancer Research
Center (DKFZ), 69120 Heidelberg, Germany
A. Santoro � F. Biondi � R. Ostan � C. FranceschiDepartment of Experimental, Diagnostic and Specialty
Medicine (DIMES), University of Bologna, Bologna, Italy
P. Fogar � C.-F. Zambon
Department of Medicine-DIMED, University of Padova,
Padua, Italy
D. Monti
Department of Experimental and Clinical Biomedical
Sciences, University of Florence, Florence, Italy
123
Biogerontology (2015) 16:353–364
DOI 10.1007/s10522-015-9551-6
previous reports regarding both the population spec-
ificity of results on telomere biology and the differ-
ences of aging in northern and southern Italy.
Keywords Gene variability � Aging � Telomere �Telomerase
Introduction
The search for the molecular basis of longevity has
highlighted the importance that mechanisms
involved in cell maintenance play in determining
cellular senescence and, consequently, lifespan in
both model organisms and humans (Kirkwood and
Shanley 2005; Ovadya and Krizhanovsky 2014). This
observation has prompted many researchers to ana-
lyze the variability of genes involved in cell main-
tenance processes to find out its role in human
longevity. Indeed, a number of genetic variants
involved in these mechanisms have been found to
be associated with longevity (Yashin et al. 2012;
Yuan et al. 2013).
Among the maintenance mechanisms possibly
involved with senescence and life span, telomere
length (TL) maintenance is certainly one of the most
widely studied (Kim Sh et al. 2002; Bischoff et al.
2005; Vasa-Nicotera et al. 2005; von Zglinicki and
Martin-Ruiz 2005; Kappei and Londono-Vallejo
2008). Telomeres are specialized structures made of
a series of tandem repeats, highly conserved through-
out eukaryotic evolution, that protect chromosomes
from degradation. In humans they consist of a six-base
repeat (TTAGGG) and their length ranges between 0.5
and 15 kb. It is well known that in most proliferating
tissues, in each cell division, human telomeres
decrease in length (usually 50–200 base pairs) up to
a critical point that leads the cell to a replicative
senescence (Wong and Collins 2003; Campisi and
d’Adda di Fagagna 2007). An inverse correlation
between TL and age emerges from literature, although
this correlation is influenced by ethnicity and gender,
with women showing longer telomeres than males
(Diez Roux et al. 2009; Muezzinler et al. 2013;
Gardner et al. 2014). In addition, it has been often
reported that the rate of telomere shortening is variable
within the elderly population and that this is associated
with metabolic decline, increased risk for age-related
diseases and death (Finch 2007; Njajou et al. 2007).
TL is then considered a biomarker of age-related
physical decline and of survival expectation (Kim Sh
et al. 2002; Panossian et al. 2003; Benetos et al. 2004;
Brouilette et al. 2007).
Telomerases are part of a specialized ribonucleo-
protein complex that adds the telomere repeats to the
ends of chromosomes. They contain a reverse trans-
criptase (TERT) and a catalytic RNA (TERC) that
provides the template for nucleotide addition (Bodnar
et al. 1998). It has been demonstrated that lack of
telomerase activity is associated with telomere short-
ening and that, in humans, expression of TERT is a
limiting factor for telomerase function. In fact, Blasco
(2005) demonstrated that if TERC is normally present
while TERT gene is down regulated, the telomerase
activity in most normal somatic cells is destroyed.
Interestingly, ectopic telomerase expression prevents
telomere shortening-dependent replicative senescence
in primary fibroblast cells and extends their lifespan
(Vaziri and Benchimol 1998; Shay and Wright 2007).
TL is a quantitative trait and it has an estimated
heritability that varies, in different studies, from 35 to
80 % (Bischoff et al. 2005; Vasa-Nicotera et al. 2005).
Genome-wide association studies (GWAS), as well as
candidate gene approaches and meta-analyses,
reported contrasting results on the possible association
between the variability of numerous genes and leuko-
cyte telomere length (LTL), which data from human
studies showed to be strongly correlated with the rates
of telomere shortening in different tissues (Daniali
et al. 2013; Ren et al. 2009). In addition to TERC and
TERT, directly involved in the elongation process, to
date several genes have been identified as involved in
maintaining the integrity of telomeres and TL. They
include CTC1, ZNF676 and OBFC1 (Hartmann et al.
2009; Mangino et al. 2009; Atzmon et al. 2010; Codd
et al. 2010; Levy et al. 2010; Soerensen et al. 2012).
However, as for other genes, a population specificity
of these associations emerges from published
L. Bucci
Department of Medical Surgical Sciences, Medical
Semiotics Unit, Alma Mater Studiorum – University of
Bologna, Bologna, Italy
D. Campa
Division of Cancer Epidemiology, German Cancer
Research Center (DKFZ), 69120 Heidelberg, Germany
354 Biogerontology (2015) 16:353–364
123
literature. Indeed, not all these associations have been
successfully replicated, highlighting the importance of
confounding factors such as gender and ethnicity.
Recently, a new GWAS brought up new genes
associated with TL, while it found that some of the
genes previously reported to be associated with TL,
showed only a nominal (p\ 0.05) association (Lee
et al. 2014).
On the basis of these contrasting results we
investigated whether the variability of thirty-one
polymorphisms in some genes involved in telomere
biology is associated with TL in leucocytes and human
longevity in a population from Southern Italy, which
has previously shown peculiar features regarding the
demography and the genetics of the elderly population
and of the long lived subjects.
Given the population specificity of genetic variants
associated with telomeres previously analyzed, we
replicated significant results in a northern Italian
population, in order to evaluate whether our results
could be generalized. In particular, we analyzed,
together with the TERC and TERT, some of the genes
which are not directly involved in telomere elongation
but are essential for telomere stability and structure
(Kaminker et al. 2001; Xin et al. 2008). Among these,
TEP1 specifically interacts with the telomerase RNA;
TERF1, TERF2 and TERF2IP are located in the
shelterin-complex that protects the telomeres from
degradation and inappropriate DNA repair, prevents
end-to-end fusion, atypical recombination, and pre-
mature senescence; TNKS and TNKS2 are other
important telomere-associated proteins associated
with telomeric DNA.
Materials and methods
The population analyzed in the present study included
985 subjects (509 females and 476 males) whose ages
ranged from 20 to 106 years. Blood samples of the
study participants were collected during the period
1996–2004, and DNA was extracted from buffy coat
and stored in our laboratory. The recruitment of
centenarians (identified through the birth registers of
the 409 municipalities of Calabria) started on 1996,
while the remaining subjects were recruited by an
appropriate campaign launched in 1999 and concluded
within 2 years. The recruitment campaign was
focused on students and staff of the University of
Calabria (20–60 year old subjects), people visiting
thermal baths in the area and the Academy of the
Elderly (60–80 year old subjects). All subjects were of
Calabrian origin up to their grandparents. The differ-
ent campaigns were approved by the relevant ethical
committees of the University of Calabria. All subjects
consented (by a written informed consent) to their
phenotypic and genetic data to be used anonymously
for genetic studies on aging and longevity.
The analyses were carried out by dividing the
sample in three specific age classes obtained according
to the survival function of the Italian population from
1890 onward (Passarino et al. 2006). The two age
‘‘thresholds’’ used to define these age classes were 66
and 88 years for men and 73 and 91 years for women.
In particular, group 1 (G1) included males younger
than 66 years and females less than 73 years of age
(N = 324); group 2 (G2) males aged 66–88 years and
females aged 73–91 years (N = 387), and group 3
(G3) comprised males older than 88 years and females
over 91 years of age (N = 274).
A replication sample included 788 subjects (376
females and 412 males) from Northern Italy whose
ages ranged between 33 and 111 years. Also in the
case of the replication sample, the analyses were
carried out by dividing the sample according to two
age ‘‘thresholds’’ previously defined (G1 N = 231;
G2 N = 398; G3 N = 232). 530 Caucasian subjects
(235 females and 295 males) whose ages ranged
between 33 and 94 years, all with Veneto descent,
were recruited at the University Hospital of Padova
from April to December 2008. DNA was extracted
from a whole-blood sample obtained from each patient
at enrolment. Fully informed consent was obtained in
writing from all the participants, and the study was
approved by the Local Ethics Committee. 258 subjects
(177 females and 81 males) whose ages ranged from
50 to 111 years, living in Northern and Central Italy,
were enrolled at University of Bologna and Florence.
Subjects were recruited through local advertisements
and the Register Office. The participants’ age were
defined by birth certificates or dates of birth as stated
on passports or identity cards. The study protocol was
approved by the Ethical Committee of the Sant’Orso-
la-Malpighi University Hospital (Bologna, Italy) and
from all participants written informed consent was
obtained. Blood samples were collected during the
period 2007–2010 and DNAwas extracted fromwhole
blood samples and adequately stored.
Biogerontology (2015) 16:353–364 355
123
SNP selection
We focused on a group of eight genes (Telomerase
RNA Component TERC, Telomerase Reverse Trans-
criptase TERT, Telomeric Repeat-Binding Factor 1
TERF1, Telomeric Repeat-Binding Factor 2 TERF2,
TERF2-Interacting Protein TERF2IP, TRF1-Interact-
ing Ankyrin-Related ADP-Ribose Polymerase TNKS,
TRF1-Interacting Ankyrin-Related ADP-Ribose Poly-
merase 2 TNKS2 and Telomerase-Associated Protein 1
TEP1) which are either directly or indirectly involved
in telomere elongation or are telomere binding
proteins necessary for telomere stability and for
maintaining of telomere structure.
To select the maximally informative set of tag
SNPs within these genes we used the algorithm
described by Carlson and co-workers (Carlson et al.
2004). Polymorphisms with a minor allele frequency
(MAF) higher than 0.05 in Caucasians from the
International HapMap Project (version 24 http://www.
hapmap.org) were included in order to cover 90 % of
the genetic variability of the loci. Tagging SNPs were
selected with the use of the Tagger program within
Haploview (http://www.broad.mit.edu/mpg/haploview/;
http://www.broad.mit.edu/mpg/tagger/) (Barrett et al.
2005; de Bakker et al. 2005) using pairwise tagging
with a minimum r2 value of 0.8. Polymorphisms
within the other telomerase associated genes were
selected from literature data and using information on
allele frequency, position, and functional effects. The
selected SNPs are reported in Table 1. At the end of
the process we had a list of 31 polymorphic sites.
Genotyping
Genotyping was carried out using the Kaspar
(Kbioscience, Hoddesdon, UK) or Taqman (Applied
Biosystems, Foster City, CA, USA) assay according
to manufacturer’s instructions. The order of DNAs
was randomized on PCR plates. PCR plates were
read on an ABI PRISM 7900HT instrument
(Applied Biosystems).
Quality control
Approximately 8 % of the samples were analyzed in
duplicate, and the concordance rate of the genotypes
was higher than 99 %. No SNPs showed a significant
deviation from Hardy–Weinberg equilibrium (HWE,
p\ 0.001) in the control group (that is the group not
selected for longevity, G1).
Telomere length
A subgroup of 457 (46.4 %) randomly selected
subjects from Calabria was used to evaluate the
correlation between the analyzed polymorphisms and
the TL. The average length of telomeres was measured
by Real-Time PCR quantitative analysis (qPCR), by
using the MiniOpticon Monitor Real Time PCR
System (Bio-Rad, 48-wells format). This method
allows to measure the number of copies of telomeric
repeats compared to a single copy gene, used as a
quantitative control (Cawthon 2002). We used the
modified protocol described by Testa and colleagues
(2011). The telomere and single-copy gene (36B4)
were analysed on the same plate in order to reduce
inter-assay variability. For the PCR reaction, 5 ll ofDNA with a concentration of 3 ng/ll (15 ng in total)
and 15 ll of mix (containing the specific primers for
telomeres (T) and control gene (S), the PCR reagents
and the SYBR green dye for the detection of the
fluorescence) was added in each well. Concentrations
for telomere and 36B4 PCR primers sequences and the
thermal cycling profile were used as reported by Testa
and co-workers (2011). In addition, two standard
curves (one for 36B4 and one for telomere reactions)
were prepared for each plate by using a reference DNA
sample (Roche, Milano, Italy) diluted in series (dilu-
tion factor 1.68), in order to produce 5 concentrations
of DNA ranging from 30 to 2 ng in 5 ll and a
calibrator sample (Roche, Milano, Italy) (3 ng/ul in
5 ll). Measurements were performed in triplicate and
reported as T/S ratio relative to the calibrator sample
to allow comparison across runs.
Genetic and statistical analyses
Descriptive statistics and explanatory data analysis
includingmissing values analysis, calculation of HWE
and the pairwise measures of linkage disequilibrium
(LD) between the analyzed loci were carried out using
SNPassoc package version 1.8-4 of R 2.15.1 (Gon-
zalez et al. 2007).
In the present study generalized linear models were
used, as appropriate, to estimate how the variability of
analyzed genes influences both the TL and the
predisposition to human longevity. Age and indicator
356 Biogerontology (2015) 16:353–364
123
of gender were used as covariates in the regression
models used to test for a correlation between the
analyzed polymorphisms and TL. In order to estimate
if the probability to be assigned to the different age
classes could be related to these genetic variants, we
compared G1 with G2 group (model 1), G1 with G3
group (model 2), and G2 with G3 group (model 3)
using sex as covariate.
In order to visually synthesize the association
results obtained in the present study the synthesis-
view software was used (Pendergrass et al. 2010).
Correction for multiple testing was carried out
using the Bonferroni method. Since 31 SNPs were
analyzed, the adjusted significance level was set to
0.0016 (0.05/31).
Results
Table 2 reports the socio-demographic characteristics
of the study population analyzed according to age
groups defined in the Materials and Methods section.
As expected, we found a very strong inverse correla-
tion between age and TL (p\ 0.001), while no
correlation between gender and TL was observed
(p = 0.914).
Table 1 Polymorphisms
falling within or close to
genes associated with
telomere functions selected
for the analysis
Gene rs SNP variation Chr Hap map position
TERC rs12696304 C/G 3 170963965
TERT rs10078761 T/A 5 1302594
rs2853691 T/C 5 1305950
rs2736122 G/A 5 1310621
rs2075786 G/A 5 1319310
rs4246742 T/A 5 1320356
rs4975605 C/A 5 1328528
rs2242652 G/A 5 1333028
rs2736100 G/T 5 1339516
rs2853676 C/T 5 1341547
rs2736098 C/T 5 1347086
rs2853669 T/C 5 1348349
TNKS rs6990097 T/C 8 9450267
TERF1 rs2929586 A/G 8 74087966
rs2975842 C/T 8 74088145
rs12334686 G/A 8 74099005
rs6982126 C/T 8 74102177
rs10107605 A/C 8 74104911
rs12335203 T/C 8 74116173
rs7845139 G/A 8 74124181
TNKS2 rs2066276 T/C 10 93547599
rs10509637 A/G 10 93577712
TEP1 rs938886 C/G 14 19907541
rs1760904 T/C 14 19921869
rs1760897 T/C 14 19946093
rs1760890 T/G 14 19951629
rs4246977 A/G 14 19952431
TERF2 rs3785074 T/C 16 67964487
TERF2IP rs3784929 A/G 16 74234528
rs2233807 C/T 16 74238769
rs11639771 C/T 16 74249153
Biogerontology (2015) 16:353–364 357
123
Table 3 reports the polymorphisms associated with
TL at the nominal threshold of 0.05. Table 1S shows
the complete list of the association of results between
TL and the analyzed polymorphisms.
After adjusting for multiple comparisons
(p\ 0.0016), we did not observe any significant
association between genetic variability in the selected
polymorphisms and TL. The strongest association was
detected for rs2736100-T allele of the TERT gene and
shorter TL (p = 0.010).
Association of telomere gene variability
and longevity
Supplementary Table 2S shows the complete list of
the association results obtained comparing G2 (sub-
jects of intermediate age) with G1 group (youngest
subjects), G3 (oldest subjects) with G1 group, and G3
with G2 group (models 1, 2 and 3, respectively; for
details see Materials and Methods section). Table 4
reports the polymorphisms which showed a nominally
significant association (p\ 0.05) in at least one
comparison.
When we analyzed model 1 (G2 vs G1), using for
each SNP the most frequent homozygous genotype as
reference and after adjusting for multiple testing, we
found that rs12335203-C allele of the TERF1 gene
positively influenced the probability to be part of the
older group (OR = 1.50, p = 6.17 9 10-4).
No other statistically significant association was
observed to hold multiple testing correction, although
in model 2 rs2066276 in TNKS2 was close to be
significantly associated with longevity (OR = 0.71,
p = 0.006). This polymorphism and the rs10509637
(in weak LD each other r2 = 0,131; see Fig. 1),
influenced the probability to be part of the oldest group
also in model 3 (G3 vs G2; OR = 0.68 p = 0.002 and
OR = 1.53, p = 0.009, respectively).
Figure 1 shows the association results including
both SNP locations and r2 values in the Haploview
style format.
In order to validate our findings the SNPs that were
significantly associated at a nominal level with
longevity (p\ 0.05) in the population from Calabria
were tested in an additional northern Italian sample.
Table 5 reports the association results obtained in the
Table 2 Characteristics of
the age groups included in
the study
95 % confidence interval
(CI)
Group 1 (G1) Group 2 (G2) Group 3 (G3) Total
N 324 387 274 985
% Males 39.81 48.58 58.02 48.32
Age
Median 47 78 96 77
95 % CI 44–49 77–80 95–97 75–79
Telomere length
Median 1.005 0.729 0.462 0.661
95 % CI 0.802–1.189 0.671–0.809 0.413–0.512 0.625–0.701
Table 3 Polymorphisms associated with the telomere length (p\ 0.05)
SNP Gene Chr Position in the genome Mean difference 95 % CI p value
rs2736100 TERT 5 1339516 -0.1418 -0.2485 to 0.0350 0.010
rs11639771 TERF2IP 16 74249153 0.1732 0.0253 to 0.3211 0.022
rs3784929 TERF2IP 16 74234528 -0.1888 -0.3544 to 0.0233 0.026
rs10107605 TERF1 8 74104911 -0.1403 -0.2702 to 0.0105 0.035
rs12696304 TERC 3 170963965 -0.1132 -0.2264 to 2.65E-05 0.051
The complete list of the analyzed polymorphisms and their association with telomere length is reported in Supplementary Material
(Table 1S)
For each SNP, mean difference, adjusted for covariates, and its 95 % confidence interval (CI) among the observed genotypes is
displayed. The most frequent homozygous genotype was considered as the reference category assuming a log-additive model of
inheritance
358 Biogerontology (2015) 16:353–364
123
replication samples comparing G2 with G1 group, G3
with G1 group, and G3with G2 group (models 1, 2 and
3, respectively). We found that, except for a borderline
association between rs12696304 and longevity
detected in the G1 versus G3 comparison, no associ-
ation could be successfully replicated in the northern
Italian sample.
Discussion
The role of the telomeres in the aging process has been
largely discussed in literature. TL is associated with
age-related diseases (coronary heart disease, hyper-
tension, dementia, insulin resistance, obesity and
cancer) (Aviv et al. 2006; Armanios 2013; Codd
et al. 2013; Campa et al. 2015) and it is known that
oxidative stress and inflammation accelerate telomere
shortening (von Zglinicki and Martin-Ruiz 2005;
Finch 2007; Babizhayev et al. 2011; Kiecolt-Glaser
et al. 2013). Several genes, as well as several
environmental factors, are involved in the mechanism
of telomere elongation and stabilization. In the present
study we investigated whether genetic variation of
eight telomerase and telomere-associated genes
(TERC, TERT, TERF1, TERF2, TERF2IP, TNKS,
TNKS2 and TEP1) is associated with human longevity
by using a number of polymorphisms we selected
using HapMap data. The pairwise LD analyses
between the selected polymorphisms showed that, as
expected, most of them are independent with each
other (Fig. 1).
In this work we did not find any statistically
significant association between the genetic variability
of the selected polymorphisms and LTL considering
the correction for multiple testing. However we
observed some suggestive associations that were
significant at a nominal level of 0.05. In particular,
the minor alleles of rs2736100 of TERT gene
(p = 0.010), rs3784929 within TERF2IP gene
(p = 0.026), rs10107605, falling nearby TERF1, and
rs12696304 belonging to TERC (p = 0.051) were
associated with a decreased TL at the conventional
0.05 P value threshold. In addition, the minor allele of
rs11639771 of TERF2IP gene (p = 0.026) was found
to be correlated with longer telomeres. This result is in
line with previous studies showing a low correlation
between telomere-associated proteins and LTL, indi-
cating that the role of the variability of these genes on
TL is probably low and would need a larger sample to
be highlighted (Lee et al. 2014). It might also be
important to notice that the reduced variability of
telomere variance associated with age (due to survival
reduction for subjects harboring shorter telomeres, and
to cancer susceptibility for those with longer telo-
meres) makes even more difficult to find an associa-
tion between genetic variability of telomerase-
associated genes and LTL in population samples older
than 40 years of age (Halaschek-Wiener et al. 2008;
Broer et al. 2014).
Table 4 Polymorphisms correlated (p\ 0.05) with the individual chance to be part of the different age groups in pairwise
comparisons
SNP Gene Allele G1 versus G2 (model1) G1 versus G3 (model 2) G2 versus G3 (model 3)
OR 95 % CI p value OR 95 % CI p value OR 95 % CI p value
rs12696304 TERC C/G 1.02 0.81–1.29 0.856 0.75 0.57–0.99 0.044 0.75 0.58–0.97 0.027
rs4975605 TERT C/A 1.01 0.81–1.25 0.931 1.35 1.06–1.71 0.013 1.36 1.07–1.71 0.010
rs2242652 TERT G/A 1.17 0.91–1.51 0.221 0.78 0.57–1.07 0.125 0.69 0.51–0.93 0.013
rs2736100 TERT G/T 1.18 0.95–1.47 0.138 1.39 1.08–1.79 0.011 1.12 0.89–1.42 0.342
rs12335203 TERF1 T/C 1.50 1.19–1.89 0.001 1.23 0.95–1.59 0.120 0.87 0.68–1.12 0.279
rs2066276 TNKS2 T/C 1.03 0.83–1.28 0.803 0.71 0.55–0.91 0.006 0.68 0.53–0.87 0.002
rs10509637 TNKS2 A/G 1.02 0.74–1.41 0.885 1.54 1.11–2.13 0.010 1.53 1.11–2.09 0.009
The complete list of the association results is reported in Supplementary Material (Table 2S)
For each SNP, Odd Ratio (OR) and its 95 % confidence interval (CI) among the observed genotypes is displayed. The most frequent
homozygous genotype was considered as the reference category assuming a log-additive model of inheritance, thus the risk is referred
to the minor allele
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123
Fig. 1 Results of the genetic association tests obtained in the
analyzed sample comparing G2 with G1 group (blue), G3 with
G2 group (yellow), and G3 with G1 group (red) including both
SNP locations and r2 values in the Haploview style format. (G1–
G3 refer to age groups: G1males\66 years; females\73 years.
G2 males[66 and\88; female[73 and\91. G3 males[88;
females[91). In the same plot the association results with the
telomere length in a subgroup of 457 (46.4 %) randomly
selected subjects from the analyzed sample were also reported
(violet). Triangles indicate the direction of the genetic effect
(association)
360 Biogerontology (2015) 16:353–364
123
As to the correlation with life span, we found that
rs12335203, a polymorphic variant of the TERF1
gene, was associated with longevity also after adjust-
ing for multiple comparisons (Bonferroni correction).
Additionally, two polymorphic variants, rs2066276
and rs10509637 of the TNKS2 gene, were near this
stringent threshold of significance. It might be worth
mentioning that a number of studies in model organ-
isms have shown that TERF1 is not essential for TL
but is crucial for telomere protection and that TNKS2
closely interacts with TERF1 (Martinez et al. 2010).
In the replication sample we found that except for a
borderline association between rs12696304 and lon-
gevity detected in the G1 versus G3 comparison, no
association could be successfully replicated in the
northern Italian sample (Table 5). The lack of repli-
cation for the association between genetic variability
of telomere-associated proteins with longevity in a
northern Italian population, in spite of the high
significance found in the southern Italian sample,
suggests (in line with previous data) that such an
influence is population-specific (Tan et al. 2001;
Muezzinler et al. 2013). It might be of interest to
notice on this point, that TL is correlated between
spouses, and that the longer the spouses have lived
together the higher is such correlation (Broer et al.
2013). This shows the importance of environment on
telomere biology; thus our results may be correlated to
the specificity of the Southern Italian elderly popula-
tion. Indeed, Calabrian aging population has previ-
ously been characterized for some peculiar features
(Montesanto et al. 2008; De Rango et al. 2010). In
particular, in the Calabrian population it has been
reported an average male female ratio among long
lived subjects of 1:2, with some areas with a 1:1 ratio
(Montesanto et al. 2008) while in northern Italy, as in
most US and European populations a 1:4–1:5 ratio can
be observed. This may be of interest, considering that,
as we mentioned, we did not observe any difference in
LTL between males and females, and a similar result
had previously been observed among the Amish
population where the male/female ratio among long
lived subjects is 1/1 (Njajou et al. 2007). These data
suggest that the longer telomeres observed among
females in most of the populations studied may be
correlated to the different life expectancy in the two
genders, which in turn is population-specific and
correlated to the environmental and demographic
factors (Guralnik et al. 2000). Thus, we may expect
population-specific results because of different envi-
ronmental factors influencing TL. On the whole, our
findings highlight the importance that the telomere-
associated protein machinery plays in the context of
cell maintenance in a complex, and still to be
elucidated, interaction with environment. In fact, this
machinery, by capping telomere ends, affects the
protection of DNA from damages, the regulation of
chromatin architecture and, finally, gene expression
(Cong and Shay 2008). Indeed, it has been reported
that a disarrangement of telomere complex has
important effects on the cell tendency to senescence
(Stewart and Weinberg 2006; Martınez et al. 2009;
Martınez and Blasco 2011).
Moreover, our results suggest that the variability of
the genes coding for proteins involved in protecting
the integrity of telomere structures, more than the
variability of those directly involved in telomere
elongation, is correlated with longevity. Thus, the
Table 5 Polymorphisms affecting age-group membership in the three pairwise comparisons in the replication sample
SNP Risk allele G1 versus G2 G1 versus G3 G2 versus G3
OR 95 % CI p value OR 95 % CI p value OR 95 % CI p value
rs12696304 G 0.856 0.657–1.115 0.248 0.733 0.520–1.035 0.077 0.877 0.628–1.225 0.441
rs2242652 A 1.060 0.782–1.437 0.705 1.037 0.713–1.508 0.850 0.874 0.607–1.258 0.468
rs2736100 T 0.925 0.708–1.208 0.567 0.782 0.576–1.062 0.115 0.856 0.633–1.158 0.314
rs12335203 T 1.037 0.821–1.311 0.760 1.067 0.799–1.427 0.660 1.006 0.760–1.333 0.964
rs2066276 C 1.124 0.883–1.430 0.343 0.961 0.714–1.295 0.795 0.904 0.671–1.217 0.505
rs10509637 G 1.143 0.823–1.586 0.425 1.077 0.710–1.634 0.726 0.974 0.675–1.405 0.887
Groups are defined in Materials and Methods
For each SNP, Odd Ratio (OR) and its 95 % confidence interval (CI) among the observed genotypes is displayed. The most frequent
homozygous genotype was considered as the reference category assuming a log-additive model of inheritance
Biogerontology (2015) 16:353–364 361
123
variability of genes involved in telomere elongation
(in particular TERC and TERT) seems to have a low
influence on the maintenance of TL with respect to
environmental factors (such as ethnicity), or with
respect to the original length. It might be worth noting
that different recent studies in model organisms and
humans have reported that TL works as a lifespan
predictor mainly at young ages, while was not
predictive for mortality in the oldest old subjects
(Martin-Ruiz et al. 2005; Heidinger et al. 2012). TL in
the elderly (at least in blood cells) might then be a
mirror of age related cell senescence rather than an
independent predictor of mortality (Cawthon et al.
2003). Finally the previously mentioned effects of
longer telomeres (and of alleles favoring longer
telomeres) on cancer (Jones et al. 2012; Melin et al.
2012; Yin et al. 2012; Lan et al. 2013) may also play a
role in our findings. On the other hand, the reported
capacity of exogen TERT of rescuing the TL and tissue
senescence, without promoting cancer (Bernardes de
Jesus et al. 2012), suggests caution and that additional
studies are necessary before drawing any conclusion.
As to the limitations of this study, we need to
highlight that: (i) several proteins belonging to telome-
rase complex (shelterin) were not analyzed in the
present study. As our results have suggested the
importance of this complex for longevity, additional
studies will need to elucidate the role of the genetic
variability of the shelterin-associated proteins in delay-
ing aging; (ii) the cross-sectional nature of the study
limits the generalization of the findings here reported.
However, since we paid particular attention to the
quality of the sampling, the false-positive results due to
population stratification are limited. In any case, it is
evident that additional functional studies are necessary
to better understand the role of different proteins inLTL,
and to understand how environmental factors may
influence the population specificity of the results.
In conclusion, we found that the variability of the
genes encoding for TERF1 and TNKS2 shows a
promising, population specific, association with
human longevity in our population. This suggests that
the maintenance of these chromosomal structures is
critically important for preventing, or delaying, senes-
cence and aging.
Acknowledgments This work was partially supported by the
European Union’s Seventh Framework Programme (FP7/
2007–2011) [grant number 259679] and by funds from
Programma Operativo Nazionale [01_00937]—MIUR
‘‘Modelli sperimentali biotecnologici integrati per lo sviluppo
e la selezione di molecole di interesse per la salute dell’uomo’’.
References
Armanios M (2013) Telomeres and age-related disease: how
telomere biology informs clinical paradigms. J Clin Invest
123:996–1002
Atzmon G, Cho M, Cawthon RM et al (2010) Genetic variation
in human telomerase is associated with telomere length in
Ashkenazi centenarians. Proc Natl Acad Sci USA
107:1710–1717
Aviv A, Valdes AM, Spector DM (2006) Human telomere
biology: pitfalls of moving from the laboratory to epide-
miology. Int J Epidemiol 35:1424–1429
Babizhayev MA, Savel’yeva EL, Moskvina SN, Yegorov YE
(2011) Telomere length is a biomarker of cumulative oxi-
dative stress, biologic age, and an independent predictor of
survival and therapeutic treatment requirement associated
with smoking behavior. Am J Ther 18:e209–e226
Barrett JC, Fry B, Maller J, DalyMJ (2005) Haploview: analysis
and visualization of LD and haplotype maps. Bioinfor-
matics 21:263–265
Benetos A, Gardner JP, Zureik M et al (2004) Short telomeres
are associated with increased carotid atherosclerosis in
hypertensive subjects. Hypertension 43:182–185
Bernardes de Jesus B, Vera E, Schneeberger K et al (2012)
Telomerase gene therapy in adult and old mice delays
aging and increases longevity without increasing cancer.
EMBO Mol Med 4:691–704
Bischoff C, Graakjaer J, Petersen HC et al (2005) The herita-
bility of telomere length among the elderly and oldest-old.
Twin Res Hum Genet 8:433–439
Blasco MA (2005) Telomeres and human disease: ageing,
cancer and beyond. Nat Rev Genet 6:611–622
Bodnar AG, Ouellette M, Frolkis M et al (1998) Extension of
life-span by introduction of telomerase into normal human
cells. Science 279:349–352
Broer L, Codd V, Nyholt DR et al (2013) Meta-analysis of
telomere length in 19,713 subjects reveals high heritability,
stronger maternal inheritance and a paternal age effect. Eur
J Hum Genet 21(10):1163–1168
Broer L, Raschenberger J, Deelen J et al (2014) Association of
adiponectin and leptin with relative telomere length in
seven independent cohorts including 11,448 participants.
Eur J Epidemiol 29:629–638
Brouilette SW, Moore JS, McMahon AD et al (2007) West of
Scotland Coronary Prevention Study Group Telomere
length, risk of coronary heart disease, and statin treatment
in theWest of Scotland Primary Prevention Study: a nested
case-control study. Lancet 369:107–114
Campa D, Martino A, Varkonyi J et al (2015) Risk of multiple
myeloma is associated with polymorphisms within telo-
merase genes and telomere length. Int J Cancer
136(5):E351–E358
Campisi J, d’Adda di Fagagna F (2007) Cellular senescence:
when bad things happen to good cells. Nat Rev Mol Cell
8:729–740
362 Biogerontology (2015) 16:353–364
123
Carlson CS, Eberle MA, Rieder MJ et al (2004) Selecting a
maximally informative set of single-nucleotide polymor-
phisms for association analyses using linkage disequilib-
rium. Am J Hum Genet 74:106–120
Cawthon RM (2002) Telomere measurement by quantitative
PCR. Nucleic Acids Res 30:e47
Cawthon RM, Smith KR, O’Brien E, Sivatchenko A, Kerber RA
(2003) Association between telomere length in blood and
mortality in people aged 60 years or older. Lancet
361:393–395
Codd V, Mangino M, Van der Harst P et al (2010) Common
variants near TERC are associated with mean telomere
length. Nat Genet 42:197–199
Codd V, Nelson CP, Albrecht E et al (2013) Identification of
seven loci affecting mean telomere length and their asso-
ciation with disease. Nat Genet 45:422–427
Cong Y, Shay JW (2008) Actions of human telomerase beyond
telomeres. Cell Res 18:725–732
Daniali L, Benetos A, Susser E et al (2013) Teleromeres shorten
at equivalent rates in somatic tissues of adults. Nat Com-
mun 4:1597
de Bakker PI, Yelensky R, Pe’er I et al (2005) Efficiency and
power in genetic association studies. Nat Genet
37:1217–1223
De Rango F, Montesanto A, Berardelli M et al (2010) To grow
old in southern Italy: a comprehensive description of the
old and oldest old in Calabria. Gerontology 57(4):327–334
Diez Roux AV, Ranjit N, Jenny NS et al (2009) Race/ethnicity
and telomere length in the multi-ethnic study of Athero-
sclerosis. Aging Cell 8(3):251–257
Finch CE (2007) The biology of aging. Academic Press,
Burlington
Gardner M, Bann D, Wiley L et al (2014) Gender and telomere
length: systematic review and meta-analysis. Exp Gerontol
51:15–27
Gonzalez JR, Armengol L, Sole X et al (2007) SNPassoc: an R
package to perform whole genome association studies.
Bioinformatics 23:644–645
Guralnik JM, Balfour JL, Volpato S (2000) The ratio of older
women to men: historical perspectives and cross-national
comparisons. Aging 12:65–76
Halaschek-Wiener J, Vulto I, Fornika D, Collins J, Connors JM,
Le ND, Lansdorp PM, Brooks-Wilson A (2008) Reduced
telomere length variation in healthy oldest old. Mech
Ageing Dev 129(11):638–641
Hartmann N, Reichwald K, Lechel A et al (2009) Telomeres
shorten while Tert expression increases during ageing of
the short-lived fish Nothobranchius furzeri. Mech Ageing
Dev 130(5):290–296
Heidinger BJ, Blount JD, Boner W et al (2012) Telomere length
in early life predicts lifespan. Proc Natl Acad Sci USA
109:1743–1748
Jones AM, Beggs AD, Carvajal-Carmona L et al (2012) TERC
polymorphisms are associated both with susceptibility to
colorectal cancer andwith longer telomeres.Gut 61:248–254
Kaminker PG, Kim SH, Taylor RD et al (2001) TANK2, a new
TRF1-associated poly(ADP- ribose) polymerase, causes
rapid induction of cell death upon overexpression. J Biol
Chem 276:35891–35899
Kappei D, Londono-Vallejo JA (2008) Telomere length inher-
itance and aging. Mech Ageing Dev 129:17–26
Kiecolt-Glaser JK, Epel ES, Belury MA et al (2013) Omega-3
fatty acids, oxidative stress, and leukocyte telomere length:
a randomized controlled trial. Brain Behav Immun
28:16–24
Kim Sh SH, Kaminker P, Campisi J (2002) Telomeres, aging and
cancer: in search of a happy ending. Oncogene 21:503–511
Kirkwood TB, Shanley DP (2005) Food restriction, evolution
and ageing. Mech Ageing Dev 126:1011–1016
Lan Q, Cawthon R, Gao Y et al (2013) Longer telomere length
in peripheral white blood cells is associated with risk of
lung cancer and the rs2736100 (CLPTM1L-TERT) poly-
morphism in a prospective cohort study among women in
China. PLoS ONE 8(3):e59230
Lee JH, Cheng R, Honig LS et al (2014) Genome wide associ-
ation and linkage analyses identified three loci-4q25,
17q23.2, and 10q11.21-associated with variation in leu-
kocyte telomere length: the Long Life Family Study. Front
Genet 4:310
Levy D, Neuhausen SL, Hunt SC et al (2010) Genome-wide
association identifies OBFC1 as a locus involved in human
leukocyte telomere biology. Proc Natl Acad Sci USA
107:9293–9298
Mangino M, Richards JB, Soranzo N et al (2009) A genome-
wide association study identifies a novel locus on chro-
mosome 18q12.2 influencing white cell telomere length.
J Med Genet 46:451–454
Martınez P, Blasco MA (2011) Telomeric and extra-telomeric
roles for telomerase and the telomere-binding proteins. Nat
Rev Cancer 11:161–176
Martinez P, Thanasoula M, Carlos AR et al (2010) Mammalian
Rap1 controls telomere function and gene expression
through binding to telomeric and extratelomeric sites. Nat
Cell Biol 12:768–780
Martınez P, Thanasoula M, Munoz P et al (2009) Increased
telomere fragility and fusions resulting from TRF1 defi-
ciency lead to degenerative pathologies and increased
cancer in mice. Genes Dev 23:2060–2075
Martin-Ruiz CM, Gussekloo J, van Heemst D, von Zglinicki T,
Westendorp RG (2005) Telomere length inwhite blood cells
is not associatedwithmorbidity ormortality in the oldest old:
a population-based study. Aging Cell 4:287–290
Melin BS, Nordfjall K, Andersson U, Roos G (2012) hTERT
cancer risk genotypes are associated with telomere length.
Genet Epidemiol 36:368–372
Montesanto A, Passarino G, Senatore A, Carotenuto L, De
Benedictis G (2008) Spatial analysis and surname analysis:
complementary tools for shedding light on human lon-
gevity patterns. Ann Hum Genet 72(Pt 2):253–260
Muezzinler A, Zaineddin AK, Brenner H (2013) A systematic
review of leukocyte telomere length and age in adults.
Ageing Res Rev 12(2):509–519
Njajou OT, Cawthon RM, Damcott CM et al (2007) Telomere
length is paternally inherited and is associated with
parental lifespan. Proc Natl Acad Sci USA 104:
12135–12139
Ovadya Y, Krizhanovsky V (2014) Senescent cells: SASPected
drivers of age-related pathologies. Biogerontology
15(6):627–642
Panossian LA, Porter VR, Valenzuela HF et al (2003) Telomere
shortening in T cells correlates with Alzheimer’s disease
status. Neurobiol Aging 24:77–84
Biogerontology (2015) 16:353–364 363
123
Passarino G, Montesanto A, Dato S et al (2006) Sex and age
specificity of susceptibility genes modulating survival at
old age. Hum Hered 62:213–220
Pendergrass SA, Dudek SM, Crawford DC, Ritchie MD (2010)
Synthesis-view: visualization and interpretation of SNP
association results for multi-cohort, multi-phenotype data
and meta-analysis. BioData Min 3:10
Ren F, Li C, Xi H,Wen Y, Huang K (2009) Estimation of human
age according to telomere shortening in peripheral blood
leukocytes of Tibetan. Ren Am J Forensic Med Pathol
30(3):252–255
Shay JW, Wright WE (2007) Hallmarks of telomeres in ageing
research. J Pathol 211:114–123
Soerensen M, Thinggaard M, Nygaard M et al (2012) Genetic
variation in TERT and TERC and human leukocyte telo-
mere length and longevity: a cross-sectional and longitu-
dinal analysis. Aging Cell 11:223–227
Stewart SA, Weinberg RA (2006) Telomeres: cancer to human
aging. Annu Rev Cell Dev Biol 22:531–557
Tan Q, De Benedictis G, Yashi AI et al (2001) Measuring the
genetic influence in modulating the human life span: gene-
environment interaction and the sex-specific genetic effect.
Biogerontology 2(3):141–153
Testa R, Olivieri F, Sirolla C et al (2011) Leukocyte telomere
length is associated with complications of type 2 diabetes
mellitus. Diabet Med 28:1388–1394
Vasa-Nicotera M, Brouilette S, Mangino M et al (2005) Map-
ping of a major locus that determines telomere length in
humans. Am J Hum Genet 76:147–151
Vaziri H, Benchimol S (1998) Reconstitution of telomerase
activity in normal human cells leads to elongation of
telomeres and extended replicative life span. Curr Biol
8:279–282
von Zglinicki T, Martin-Ruiz CM (2005) Telomeres as bio-
markers for ageing and age-related diseases. Curr MolMed
5:197–203
Wong JM, Collins K (2003) Telomere maintenance and disease.
Lancet 362:983–988
Xin H, Liu D, Songyang Z (2008) The telosome/shelterin
complex and its functions. Genome Biol 9:232
Yashin AI, Wu D, Arbeev KG et al (2012) How genes influence
life span: the biodemography of human survival. Rejuve-
nation Res 15:15374–15380
Yin J, Li Y, Yin M et al (2012) QTERT-CLPTM1L polymor-
phism rs401681 contributes to cancers risk: evidence from
a meta-analysis based on 29 publications. PLoS ONE
7:e50650
Yuan R, Flurkey K, Meng Q, Astle MC, Harrison DE (2013)
Genetic regulation of life span, metabolism, and body
weight in Pohn, a new wild-derived mouse strain. J Ger-
ontol A Biol Sci Med Sci 68:27–35
364 Biogerontology (2015) 16:353–364
123