Additional File 1

H1000 Pilot Alu loci validated and sequenced

>H1000_P1_Alu_Locus_1_consensus_sequence_NA18953_hg18_chr15: 49778223/4

TGATTTTTCCCTAGGGAACCTAACCCTGGCTCACTCTCAGAACATTTGACTCCACTGGTGGTAGAATAACTCAAGAATGACTAAACAGGGTCTTCCATGACCTGGGCTATAATTCAAGGAGGAGCCTAGGACCTATCCAGGTCAGTGAGACTCAATGGTAGGACCACTGGTAGAAAGAGGCTCTCTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCTTGGCTAACACGGTGAAACCCCGTTTCTACTAAAAATACAAAAAATTAGCCGGGCGTGTTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACCGCACTCCAACCTGGGAGACACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGGCTCTCTTTCCACTGGGATTGATGTGCTGTGAGG

>H1000_P1_Alu_Locus_2_consensus_sequence_NA18912_hg18_ chr9:11421372/3

TTACTATGGGTATTACAGCATCAAACTATCTATAAAAGCTGGGTCATTTTGAGATGTTTCTAATTTGCTCTATGGGGTATTTCTTTTCAACGGGAAATCAACTTGGCATTTAAAATTGAAGTCAATGAGAAACTAGGTTAATTTCATGCAATTCAACTCTTGAGCCAATTTTTCTGACTCACATTGAGTCCATAAATATGTATTATTAACATTCTGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAACATTCTGTTAATACAATACAACTTGTTATAGTAAAATTATCGAAGCTCAGATTTGCAAAACTGTTTCTATTATCCACCTTAAAAACCTACAGTGAGAAATAACTTCACTTTTCATGTAAAATACATGAAAAGTGGAGAAGAATGCCATCTATCCAATTTTCAAGTTTCCTTGCTGTAAAGATAATGCTTTTGTTTTCCAATCACTGCCTCTCCAACTGGTAGGTAGTAGAAACAGAAAACACGCAAACTTGAAATTGACATGCTTTGCAGAATCTGAGATGGAATGTTTCTCTGCCTATCAGTTCAGGCAGAACATATAATTATTTTCACATCTCACAGGAGTAGTCCTTTCAGCGTTAGATTTTCTTAATGCTCTGAGTCGGCAATGACAGGGAGAAAAAGAAAAAGAAGGGAAAAACACATTTGGGGACTGTCATTTGCAGCCAGTTCTTTGAAACTAATTTTGGAATGACTTTTAAATTCTGCAAAACATTTATCAGGCAATTCTCTTGATGTAGAAAACAGTTATTTCTCAGTTAAATTTGCCATAAAGTTTTCCCAACTCTTTGTCTTCTTTTTGACAGGCTATTTTCAGGAATGTCATCACTGCAGGGAAGGTAGAAGTGTGACTGCTGTTGTAGGCAGACTTTTGTTAATGCATTCTTGTCCAATTCCACATTGTGAAGTATTTAGGTATGGCTGTGGCATAGATACTTATATGGATAGAAATGACATAATTATTGCAATCTT

>H1000_P1_Alu_Locus_4_consensus_sequence_NA07347_hg18_chr21:40373935/6

AGGGTGGCTAAGGGAGAAGGGCGCCTCCAAACGGCTGAGAGGGCAAGCGCCACGCTTCATGGCTGCCCAGCCTTGGCACCTCACATTCACACCAACGCCCTTGATTTTCAAACTGACATTCTTCTTTTTAACTGCAAATGAAACAATAAAAGAGAGGACCAGAACACTCTGGAAGGTCCAGCTGTCCCTCTCATTATGCCGTGGCACTGCTGAAGCCATGTGAGGAATGACAAAGTTCAAACACATAAACGTAAAACATGATGGATCTTTTATGATTCCAATCTCCTCTTCTGGCCGGGAAAAGAAAGGATATTAAGAAGCGATGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGCGAGGCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGCGATGAGAAGGCATACCTACCTTTTCCTAAGGTCTTTGCTTCTATGATTTCACTTATGCGCCCTGGGCCCACTCCATTTTGGGCTGTCAGTGTGAACTTATACCAAGTCCCACATTTGAGATTTTCCAAGCGATAGGAACGTTCGCTGGGGCTGATTGGAAAACTCCCCCACTGCTCACTATTGTCCTCGGAGTACTGCAGTATGTATCCTGCAGAGAATGAGAAAGATTCACATGAGCACTGTGTTTGCTTTCTATGGGAAGTGGACTGATGCTTGCATTTTGTGTGGGTAATAGAACGAGCATTCTCAGAACTGAAGAATCTTCAGAAGGAACATTTTCGCTCTTTCTGATTCCAGGAAATGTAACCCAGCCTGGGAGAAGCACCATGATGTATTGATTAGTGAGTCATTTGGGCCACACCAGACATTATCACTGTGAAGTATTGCTGTTTTCTGCTCATTCTCTTCTAAAAGCCATATTGAGCAGCAGGGAATA

>H1000_P1_Alu_Locus_6_consensus_sequence_NA18870_hg18_chr3: 125640182/3

TCTCGTCACCACACCAGTCCTCATCTCTCCGGTATTCTTGCTCTAAGCTCTCCAGGACACTACACACCTAGTGAATCATGGAAGAAAAGACTCAGTAAATTAATTATTCAGGAATTATTCTCTGAGGACCTTCAGCCTATAGAAGCCTACACATATGACATTTTTCATTAGAAGTTTAATGCCTCTGAGACATCTAAGAGAAATCCAGGAGGCAGTGACAGTCCTGTGTCTGAAACCTGGGAGACATGATGACTGGAGATACAGATTTTGGAATCATCTTTTTATGGGAGTTGATGACATTACCTAGGAATAGTAGGTAAAGTAAGAAAGTAAGACAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTAAGACAGTCTAGTATCTTTGGAGTTTCAGTGTTTTTACACATTATATTGTTATAATCTCACAATAACTATAAATTAGGTAGAACAGGAAATGAGGTTTGGAGAAGATACTTGACTTATCCGACCATCTGTACTTGTCCCATAGTAAGGAGCCTCAAGCAGAGACAAAGGAGGAAGTTGCCTATGTTGTATGGTTTACAGGCCATAAATGAATGTCATCTTTTTCCTCCCCTGGGGAAAAATGTCTCAAAAATCCCACCATAGGACATGACATCTCCAGAACCTCTATTACAAAATACACATTTCCTGTAGAGGGGTAACAAATTTGGGTTAACCTGAAAGACAGTTAAGAAGCTTTTTAGTTCTAAAGATGCTGAGAGGTCATGCTAAGTGACCTTATAAATGAACTCAGAAGAGAGCAAAAGCATTTTGAAGGGAGTTTGGAGGGAAATTCAGCCTGGGTCCCATAGTGGAAAAACCAAGGCAGCCTAGTATCAGGGCCTGGAGGAGGATGCAGAAAA

>H1000_P1_Alu_Locus_8_consensus_sequence_NA18870_hg18_chr22: 45618022/3

GGCGTCACCCAAAATGTACTGGGGGCCACACTCTGTGCTCTTTTGGGCCCAGATAACAAAGGGGGCATGCTGAGGTGGCTTAATAACAGTGAATGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATAACAGTGAATGATTCATATTTGGGACAGCTTCAGAATAAAGCCGAGTCTCAATCCCCTGGCATCCCAGGAGGAAGAGCTGCTGCAGCACCGGCCGGGCAGCCACTGTATACCCGTGGCTGTTTTATCTCTGCAGGGGAGTTATTATCATAAAAATCAACCACAACAACAACAGCTGACTTGACTGAGCGCTGCTCTGTGCAGGTGGTGGTTTGTATTACTGTATTAGTACACCGAATGCTCGTAACAACAGAAGCAAGTGATTCCCACTTGACAGATGAGGACCCTGAGCTAAAGGCGAGCAGCAGAACTGGCTCAGTGCCTCCCC

>H1000_P1_Alu_Locus_10_consensus_sequence_NA06986_ hg18_chr5:56866478/9

GTCAGTTGTCTGCCaATTGATCTGTACATTTAACCAAATCGAAATATAAATTCTAGCATTTTTTTCTGAAAACTGACAAGCTGATCCTAAAAATCATATGGGAATACAGAGAAGCCAAAATAATTTTGATAAAGAATGAAATTTGAGACATATACTACTTGTTTCAAGAATGATTATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGATTATAATGCTACAGTAT

>H1000_P1_Alu_Locus_15_consensus_sequence_NA07346_ hg18_chr4:72938680/1

AGTCCCTACTATGACTGTATTGTTGTCTATTTCTTCATATATGTTAAAATTGGCTGTATATATTTTGATGCTCTAACACTGGGTGCAGATATATTTTTAATTGCTGTATTCTCCTGATTAATTGACACTTTTACCATCATGTAGTTACCTTTATCTCTTGTGACAGTATTTGACGTATATTCTTTTTTCTGATATGTGTAGCCACTTTTAATCTCTTTTGATTATTATTTGCATGAAATATCTTTTTCTCTCCCTTTACTTTCTGCCTATGTGTGTCTTTAAATTAAAATGAGTATCTTATAGGCAGCATATGGCTGGATTTTTTTAAATCCATTTAGCCACTCTATGTCTTTTGATTAAAACATGGACTTTATTAGTATGTCAGGCAAATCTATAATATATTAGGAAATAATTGTAAATCAAAGAAAAGATAAATACAATTAAAAACAGAATGTTCTACAGTTAAAAAGAATGAGGAGACTCTTTAAGGAGAGGAACTCTCTCACCAAACTATAGTTTGCAGTAGGAATAATATTATTCTCTTGAGGAAACAAGACTATAATCATTGAAGTAATAAATATACAATGGAATGTTTTTTGCATATGTGCCAACTTCCTTCTTTAAATATGTTGTTCACCCAAGCACAGAAAGTTTTACTTTAAAGATTTTACATTTACAACTCATAAACAAGAAATTCTCTGTAGCACATTCTCTGGTAAGTCGGTGATATTTCAGAGCTGCTTAAATAATACTTTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATAATAATACTTTCTTACTGTTGGTGGTGGATTTCTTGCTTCCATGTGACTGGGGAGGGTAAGAAATTTTTCTCTAATTACCAG

>H1000_P1_Alu_Locus_18_consensus_sequence_NA07346_hg18_chr1:216068449/50

TTTTTTTTTTGGTGTGATATTCAAAAAATCATTTCCAATGTCAATATCaaagaagttctacctataGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAaaagaagttctacctataTCCTCTTCTAGGATTTGTATAAATTCAGATGTTACATTTAGGTC

>H1000_P1_Alu_Locus_23_consensus_sequence_NA12828_hg18_chrX: 145346811-2

CCAAAAATTTCATACCTTTCCAATCTAAACTTCATGAGTGAAGGAGAAATAAAATATTTTCCAGACAAGCAATCACTAAAGGAATTCATTACCAGTAGACTAGGCTTACAAGAGATCCTCAAGAGAGCAATAAATATGGAAACAAAACAACAATCCCTTACCCCAAACCACATTTAAATATATAGTCCGCAGACCCTATCAAGTAACTACGTAATAGAAACTACAAAGCAACCAGCTAACAACTTCACGATAGTATCAAAACTTCACCTATCGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGGCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAACAAAAAAAAACAAAAAACTTCACCTATCAATATAAACCTTAAGTGTTAATCGTCTAAACGCACCA

>H1000_P1_Alu_Locus_25_consensus_sequence_NA18542_hg18_chr5:82413599/600

TTACTATAATCCAAGCAAGAAATGATAGTGGGTAATAACAAAAATCTGAGCAAGAGATGATCAGTATACTAATAGCAGAAATAGTAGAAAACTGTTGAATTCTAGATATATTTCATAGAAAAAGCCAACAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTATGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGCCAACAGATTTGTTGGAATACAAGAGAAAGGAAGGAGTCAAGGATGACTCCAAAGATTTAACTGAGCAACTGGCTGTATAAAGTTGCCATCAATC

>H1000_P1_Alu_Locus_27_consensus_sequence_NA11894_hg18_chr2:141250525/6

GTGGGAGAACAATGTATATTTTATAATTGTTGTTTAGATATTTTGTTAGATTTTGCCATTTATTTACAAATACGTATCGTACAAAACTACATGATTATGTTTAAGTATGTAAATAATAAAAGCTGATTTTATATTAATTTGAAATATGCTTTTATTTACATCTATATACTTACATGTTATGTAAAATATAAGAATATTATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATATTATATATTCTTTTCTAAgAAAAAGAAAAGTTAAATTGAAGAGTCTAACTGTAGAGGAGGAGGAAAGTTTGAACAA

>H1000_P1_Alu_Locus_28_consensus_sequence_NA19210_hg18_chr6:91189894/5

GCTCAGGTGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATAGCTCAGGTGAATAGGACGTAAGCACTGAATGGGAGGGTGAGTGTCAAAGAGAGGAGTTGGATGACTTCAAGGTTCTGACTTGGGTGGTTGAGAAGAGGGTACAGCCATTCACCGAAGGAATAGCAAAGGATGAGCAAGTTTTAAGGGAAGGATAAATAATTTAAGTTTTATTTATAGCTTCATGACACCTAATTGACATATAATGAGCAGCTCACATT

>H1000_P1_Alu_Locus_32_consensus_sequence_NA18504_hg18_chr2:67996583/4

GGGCCTGAGGTCAGGGTTATTTTCTCTGACTCCAAGGCAGGTAGGGAGGGTCTGCAGCCACCCACTACCTTCTCAGTGACCCTTGCTGTTGGTCTCCATGAAAAAGTCCTCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGCCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGTCCTCCTTTCCTCCCCGATCAGCCAAAGTCTATTCTGAGCTTCCCCTTTTCACTGAAAATTCAGAAGGCTGCCTCCCTGTCTCTCAGTCTATTTCAGTTATATTTCTCAAGGCAAAACCGGGTTAATTACCCAGAAAGTTGGCCGTCATTTAAGGGCCCGATTTACTTAGACCCAGAAGCCACATATGTGATAGATTCAGCACAAGTTCCCAGGGCAGCCTCCCTGaTCCCCAACCCACGCA

>H1000_P1_Alu_Locus_36_consensus_sequence_NA18504_hg18_chr7:92862269/70

TAGGATCCAGAAAAGGAAGATTTTCTGGACTGACATAAATATCTAAAATACCTGAATGTTGTACTTCAAAAGTAACTTGAAGCAATTTTTAGTGAAACATACCGACATATTTAAAAAATAAATCAGACATATATGAGGAGGGAAAAAACTCTACCAGGTTTCATTTCCCAGAGAATTACTGATATAATACAAAAGCATTTGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCATTTGTCTAaTCTTCCTGGCAGCtGAAG

>H1000_P1_Alu_Locus_39_consensus_sequence_NA07347_hg18_chr2:44679354/5

AGTCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATCAGAAGTCCTTTGGGTCTTGTCTTAGCAACTTACTTGTTAAAGGCTCTGGGTGGGGAGGTGGTTGTGAGGCGATATAAGAAAATGAAAAGAAGGAATAAATAAAGTCATGGTTTCACAATGTGAAGTTCAAAAAGGCTATATACCATCACAGGTGTTCAGTACATATACCAAACCTCATATTTACAAGTTGCTAACTGGAATTGCATGATTAGATTGAGTAATCACA

>H1000_P1_Alu_Locus_40_consensus sequence_NA19210_hg18_chr2:31559696/7

TTCTGCATCAGACTGTTGGCAAAGAGCTCGCCTTGCAAACTGTGGCAGCTTATTGGGAGCCATGCCACCCACTCCTCTCAGGGAAATGGGTTTGGGTGATTGTCAGCATTGGGAGCCATAGTGGGAAGGTTCTGGGCTGTGGGTAGGTTGCTGCACAGATGTGGGCATCTTTACTGCCTGGGAGTGCCACACGGTCTGTGTAGTTCTCACTCCATAGCTAAAGCTCTTGGTAGACCCAAGGAAGACCTGAATGGGGACCCATATGCCTCCTTCACCCACTGTGTTGAGGTCTGCGGATGGTGGATTTGTCTGCCCCTGGGGTTCCTCTGTGCCCTCCCCACTTGGGACCACATGTACCCACTTTACCTATAAATCCAAAAAGCATATCGAATTTTAAAAAGAGGAAGCCCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGAAGCCCCACCTGAGTATCAGGAAGAACCCAGTCCTGCTAACTCCACACAGGTTGCAGTTGCAAAGGCAATTAAAGCCACTGTACAGAGCCCACT

>H1000_P1_Alu_Locus_48_consensus_sequence_NA18942_hg18_chr20:16176656/7

GAGAGGGACTCAACTGAGGACCATCACTAGACAGCATTCCTAGCACTTAGGGAAAGGAGTGCCTCGTCCTGAAGGGGAGATCTGGGAGGAGCTCCTGAATGAAGAGGGTCCTAGTAGGGGGCAGTGTAGTGAGGGAGTCAAAGTAACATTCCCAAATGTGAGGCTTCAAACTCTATTTACCTGGTACCAGCAGCCAGTGCAGCCTGAACACTCTGACCTCGGGAGAGGAACTATGAGCTAGTTCCATGCCAGCTCCTGAATCTCTCACATGGGATTCTAAGAGTATCGGAGGGTGAGAATAAAGAGTCTCTGGAATTAATACTCTGTTGTTTTTTAAAAGCCTGGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaaaGCCTGGGGAACTTAAATGCTGGTTGTTGGGGTTTCG

>H1000_P1_Alu_Locus_52_consensus_sequence_NA18563_hg18_chr5142335179/80

ATCTTAGGTACTGGGAATGATGAAGTTTACTGACTGTCGATTGGGAGATGATACACACAAGAAACATCTAAAGAACAAAGCTAAGACTAAACTTTCAGGGATCATCTTTATAGTTTGCTAAATGATCAAAGCTAAGTTGAATTAAAACTATTTATTAAGTAGCTAACTATGTGTAAGAAACAATAACCACATTCAGGTCATTTAATCTGATGGTTTTAAAACTATTAGTACAGAATATCTTTTATCAAAAATAGACAGACAGGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATAGACAGACAGATAAAAATTGAATGTGAAACCCCAGTACACCAGCAAGATGAAAGCAGGGCAGCTCTGGAAGAAGCTGGGAGAAAGGTTTCTTTCACCTCAGCAACTGTAGAGTCCCAAAGATTCTTGAAACATAATTTGAAAATCACTACTGTAGACGCAGTTCTCTAGTCCTACCCCTTTTATATTAAAGCTGCAGAACCACAGGCCTAGGAGGGGTGAGCAGCTTTTCCAAGTCCATGCCGTTTAGCAGCACAAGGGAAGCAGATGCTACATCT

H1000_P1_Alu_Locus_53 is a deletion from the reference genome

>H1000_P1_Alu_Locus_53_consensus_seq_indel_upstream_NA18504_hg18_chr10:28274806/7

AGCTTCACTGTGGTGAGCAAAATCCTGGCTGAACGCAGAGTCTTGCAAACCAATGTCTTCTTGGTGAATCGCTACATGTAAAGAGTAGTAGTGAGATGCTCCTTCAGGATTAAAAAACAAAACCCAAAAGATTAAAAATAAAAAAGAATGATCAGTAAACCAGACCTGCCAGGAGATTAAAATCAGAATTCACTGCAGGAACTCTTAGACAATGTCCACTGGTCATTTCTGCTTTGAAAATCTTCTAAGGAGTAGTGCATATTACCACTACTGCTATTCAGCTGGCTGATAAGAGTTCTGGCATCAGCACTAAAGTAGCGCATCACACACAAAAGCAAGAAGGCTGTTCATTTTTGTAAAAGGTGCTGGTAATAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACATAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGGTGCTGGTAATAGACAAGCCTTTGATCCCTGCTTCAAA

>H1000_P1_Alu_Locus_54_consensus_sequence_NA11831_hg18_chr5:78289515/6

GTGCAGGTGCATCGCTGACCTGACAGTGCAGTATGGGTCTGCTCTGGGTACTGCTATCTGGGTCTTCAGCACTAGACTGAGCCAACTCCAGCCACCAGCCAAGGTCCAGATGGGGATAGGATTAAAAATCGGAAGTCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCGGAAGTCTACAACAATTTGCAGCCCACGTAAAGTTTTAAAAAAAaTCAGGAAATATCACATCGATCTGTTTTTATATAAAAAAACTTTTTTGGAAAAATCAGAATTTCTGACTACTCTTTGTCCACACTCCATCTGGTAACAAAAGGCTGGAGTATGAGAAACAGGGGCCCCATCCCCCTCAAATGCTATCCAATTTTCTAGTTTCCCACTGTTCTACATAAACTGCTTCACT

>H1000_P1_Alu_Locus_56_consensus_sequence_NA18563_hg18_chr5: 111686589/90

CACACACACACACTCACACACACACCCCACACACACACACCTGTCTTCCACTACTTGATGTTTTGCCACTGCTCCAGAGTGCTCTTAGCCTGCCTGATAAATAGGAACCCATCAAAGACAAAGAAAAATAACAACCCATGTAAGGGGTCTCCGCAACTTGAATGAGAGAGACCAAGATGAATAACCAGAACAAATAGGGCCTATGAAAAAGACAGAAGAAGGTAAAGGGGGAAAGGTAATGGGGACTTTCAAGAAGATACAATTAGAAGACAAGAAAGGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAGAAGACAAGAAAGGCTTTCTAAAGCTATTTGATTTCTGGAATTAAAGTTTCAATAGACAAGATGAAAAAAGTATAGTCGTTGCCAAGAATCCATTCAGAGTTCTGAAAGATCAAACAAACATTGTAGGTAAAAATATCAGAGATGTGGAAGATGTAACCAGAAGACAAAACATGCAGATAACAGGCTTTCCTGGAGGACAGACAACAACAAATAAGACATAACTGGAAAGG

>H1000_P1_Alu_Locus_57_consensus_sequence_NA11831_hg18_chr7: 29151682/3

CTTATCAGTTATGATTGATGATGAAGTCTATGGTGAAGACAGAACAAAATAATGTTTAAAACTCTGGCCGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTTCGTCTCAAAAAAAAAAAAAAAAAACTCTGGCCGTATAATGACtGTGGCtATGCATGACCCGTGTGCAGTCACCTCTGAGCCCCCCACCTTCACTGCAACCCCAGTGGGTCCCAAGCAAGGTGCTTGGGTTTTGGAGCTGGACAATTCTGTGCAATTCCTGGTTCCGGTATCCACTACTTGGATGACATCAGGGACGTTACTTATCTTCCACAGCCTCAGTTTTGGCATCAGTAAATGAAAAAGGAGCCCCTCAGTACTTGCCTTTCCCTTCCCCGGCTAAATGTACAACTCATTTTTTTTTCCATTCTTTGCTTTGGGATGAGTAAGAACAAAGATGTAAGCAGAATAAAAAGTCCATTGAGAATACATTTTATTAGCTTGGTAAATAACGTTTAAGAAAGTTGTCCAAAAGGAGAATTGGAGCACTTTTGGAAAAGTACACTGCACAGGCTTTGTTGGCATATGAAAGTCTGCATGGTCGTCAAGACCGTTTGGCTAACTGGGCATTC

>H1000_P1_Alu_Locus_58_consensus_sequence_NA18572_hg18_chr1: 155630111/2

CATGAAGAAGATATAATGATTTTCCCAGAGGAACAAAAGCTGAAGGATTTCACCAACACCAGACCAGTCTTACAAGAAATGCTAAAGGGAATTCTTCAATCTGAAAGAAAAGGACATTAGTGAGCAATGAGAAATCATCTACAGGTACAAAACTCATGCATGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAACTCATGCAtGGTAGTAAGTC

>H1000_P1_Alu_Locus_61_consensus_sequence_NA06986_hg18_chr5: 37724568/9

ATATTCCCAGTCTGTTCACATGTGTTCAGAATGATCATTTAAAAATAAGCAAATTTCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACCCCGGCTAGAATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAGCAAATTTAGGTTTCCAAGATGGCCAAATAGGAACAGCTCTGGTCTGCAGCTCCCAGTGTGATCGACGCAGAAGATAAGTGATTTCTGCATTTCCAGCTGAGGCACCTGGTTCATCTCATTGGGACTGGTTGGACAGTGGGTGCAGCCCATGGAGGGggCAAGCCAAAGCAGAGCGGGGCATCGCCTCACCTGGGAAGCGCAAGGGGTCGGGGGAATTCCCTTTCCTAGCCGAGGGAAGCCGTGACAGACTGTACCTGGAAAAATGAGACACTGCTGCCCAAATACTGCACTTTTCCCAAGGTCTTAGCAACCGGCAGATAAGTAGATTCTCTCCTGTGCCTGGCTTGGCGGGTCCCACACCCACACAGCCTTGCTCACTGCTAGCGTAGCAGTCTGAGATCGAACTTCAAGGCGGCAGCCTGGCTGGGGGAGGGGCGTCCGCCATTGCTGAGGCTTGAGTAGGTAAACAAAGCAGCTAGGAAGCT

>H1000_P1_Alu_Locus_63_consensus_sequence_NA18870_hg18_chr1: 84827141/2

agtctataaaAATCCCACTTGATCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCACTTGAGACTTAGGTGCAATGTCAGGTAGGGGCACAGCGGGCAAGATTGCAATGACTACTGCCCTGGACCTGACCTTGCATTACCTTGACTTCCTCAGTTACCCCAAGTTGTGAGCCTCAGAAGGACTGACTTATGCAAACTGAATCCAGAAATGAATGCATAATCTAGAACACCAATTTCTTTCTATCTTTCCTCTTTTCAATAACCAGTGAGGTAAGGTAATTTTCCTAGGGCCATATAGCTGTTAAAGACTTGACCTGGAGTATAATTCAAGTATTTTGATTCTGTCCGAAATTAAAGGTACTGAAAGTGCAGTACCAATACCAATGGAATTGTAGGATGATAAAGATCAATACACTAAGAACCAGAAATGTTATTTGCAGACATGTTATCTCTCTGTAAAATTAAGTCTGATTAATTGACCTAACCCCTGCCTTATGAGGATATAT

>H1000_P1_Alu_Locus_65_consensus_sequence_NA11831_hg18_chr4: 13441791/2

CTGTGGAGGCTGCAGGAGAGAAGCGAATCAAACATGATGTGCAGGGCTGGGTCCTGAGTAACTGAGTAAAAAGTTCTCATTTACTGAGATGGAGACACTATTCCTAGGGCAGGTTTGTGGACAGCATGGGGCAGAATATTAAGGAGCTTGTCTTGGCCAGATTCCTTAGATTAGATAGTCAAATGGAGATGTTAACAATTAAAAGTTGCTTTTATTATCCCTAATTTACAGAAGAGGAAACTGAGGTCTCGCAGGTTAGAAAAGCAGGACTCAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGACACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGCAGGACTCATAACAAAACCTGTCCAGACCCAGCTTGCTTCCCCAGACCACACTATTATAAACCTCCCTGCTGCAGACGCGAAACAAGCACCAAATGAGATCATAGACTTTTAAATTATAATGATTATTAACGTGGGACAGTGTCTGGAGACAGGCAGGGCATGGAACCTACAGGATCTAGGGAGCAGGTAAAATGTGCTC

>H1000_P1_Alu_Locus_69_consensus_sequence_NA06986_hg18_chr2: 97948589-90

ACTCTTATTCTGTCTCTTTCTAACTCCTTTGTCTCCGCTGGACTCGGGGTACCCGCCAGGTGGTGTGGGGCTGGTTTCTCCAACATTTTTAAAACAGGCACTACTGCATAGATTACCTGGCACATAATAGCTACCACTTACTACCAAGGGCCACGCTGCTAAGCACCAAGTGGACACCAGGAATGATGAATCTGGATGGCTGTGACAAGCCCCATGGCTGGGCACCAATTCATCTAATCTCACAAACAGCACAGATTACTTAAAAATTTCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAATTTCCTAATGAAATTAGGGAATGTGTAATGAAAATTACTGCTCCTAAAAATCTGAAGAAATTCTCCTGTGAATTTAGATTGTGTAAAATTACCTACTCCTAGACAGGCTAACTTCAAAAGCTATTTTCTACCTTTCTTTTGCCTGCCCATGGAGAAGTGATTTAAATGTAACCCTGAAATTCACATAAAGGTAGAACT

>H1000_P1_Alu_Locus_72_consensus_sequence_NA07357_hg18_chr4: 186619140-1

TTTCTATATGTAGGTACTTCAAAACGTGACTACCGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGTGGGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAAGAGGCGGAGCTTGCAGTGAGCCGGGATAGCGCCACTGCAGTCCAGCTTGGGCGAAAGAGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAACGTGACTACCATCAGTTCATTTCACTTTACATGGTCCTCTTTGTTACAGGAAAAATGGACCATCAGAGATGAAAATAAGGAAACTCCGGTCCTGAAAACCTTAAAAGATGTGTATTTACCTCTGTACTTTTGCAGTTT

>H1000_P1_Alu_Locus_74_consensus_sequence_NA18870_hg18_chr10: 71280181-2

CCTCTTAaGAGACATCAGGAGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGACATCAGGAGAGGACCTGGAGCCACACGTTAAACTGCCTGGCATGGGGTGACACTCGAGAAACAGGGTTTCTTACCCCATGGCGCATGTCTAATGCAGGGGCCTTCCAGCGGCCTCCTGCGTCTGGAGGAAGCCACCTACTGAGAGGT

>H1000_P1_Alu_Locus_78_consensus_sequence_NA18953_hg18_chr4: 142901045-6

TTAATTGTTGAGCAGCAAATCAGAGCAAAGGGAGCAAGTAAAATTCAAATGGCTGGTCAACTTCAGGCTCTGAGAGGCTGGTGTATGTGTCTCTATGAGAGGAATATAGCCATTCTTGGCAATGAACAGGTCAAATCTTCCACCAAGGGACCCTTTTCCAGAGAGCAAATGCACGAGCTTTCCTGAAGTTTGCTTTCTTCTCTAACTCTCCTTTACCTTTTCTCCATTCAGTATTAAAGCTTCTTATCACTGACACACTCTTTCATTAGTTATATTAAACTCTTCCAAAAAACTTTGCAAAACCCTAATTCACCGTTTTATGCAGAATAACACTTTTCCCTTAAATTTTCATCCCAATCTAATATTTAATATTATTTTTCCACATATTTACTTGTTAGTATTGCTAATAACAGCAGAATGCTCTTAATCTGCTCAAATAATTAAGAATGACAGGCAGATCAAAAGACCAAAAGAGGATAGAGAGAGTCCAGGAAGGTAGCTAAGTATATATGTAGAAAAATAATCACATAATAAAATACAATTTATTTACCTTTGGCGGAAATAATTAACTGAGATCCCCTGTTTCATACCTCAAACCAAGGTAATGAGTCAAACAATTTCAAAACCCAAAATGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCAAAATGAAATCAAAAACCTACCTGGAGGAAAAATACATGGATTTAAATTTAAATTTAGGCTGAGAAAAACCTGTCCAAGTAAGATGTCAGGGGC

>H1000_P1_Alu_Locus_80_consensus_sequence_NA07346_hg18_chr5: 168177598-9

TACTGCATGTAATGCTTGTGGGCTTAAAACCAATACCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAACCAATACCACTTTGTGTGCGCTAGCTGGAGTGAGCAGGCTGCAGACAGAAGGGAAATTTTTAGAGGATGTACCTTCTTTCCACCCTCCCACTTAAATAAGGTGTTGTCTGTACCAGACTCTTGCAATCCATAGCCATCTCTCCACAGTGCCCTTGCTTTCCTTCCTGTGTTCAATTCTGTCTGGTGTATTTGCTATTCTGACTGATTCAGGTATGGCTGAAAATATTTTCTAAC

>H1000_P1_Alu_Locus_81_consensus_sequence_NA18504_hg18_chr16: 70682702-3

TTAaGGCAGGTGTAGAAAAACAATACGGTAAAGTGTACTACTTTGGGGCTAGTAACAGCGGGATGCTGTACCCATCCCTAGGCCATGGGAGGAAGAAGCCACGGTAGGAAGCAGTTATAAGAATTGTGTGGCAGTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGGCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATTGTGTGGCAGAAAGAGGTGAGTGGAGAGGACAGTGTATAGGAGGGCAGCCTGCTGTTAGGTGTTGCAGCCACTCTCCTCCCTCCCTCTGACCTTTGCTCATGCAACCACCGGCTGACTCCAACTGAACC

>H1000_P1_Alu_Locus_87_consensus_sequence_NA18504_hg18_chr3: 175733605-6

GAGGACTAACTTTCTAGCTCATTACAGACACCCCTTACCCTTTCCTCTCCACTTTCTTTTACGTGCCCACCTTATCTAAAAAAAGCAAATGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGCGTGCCTATAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCATTGAGTCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAAACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGCAAATGTTTAGCCAACCGGGATTAGTTTAGGTTNTATGACCCAACCCCAGCCAA

>H1000_P1_Alu_Locus_92_consensus_sequence_NA18563_hg18_chr7: 84851738/9

ATGGTTTTAAAAATTGGCAAGTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATTGGCAAGTAAATAAAAGAGTCATAGGGTTTTATTGGACTTTAAGTCCACGCATTCCTTAAATTATACCATGGGCAAACATAAATTTACAATGTATGTGTCTTAACTTTGCCCCTATATTTTGTGAAGTGAAAACATTTCAATTTCAGGAGCTAAGCAATTACAGTGTCCAGTCACTTTGCAAATAAGTCTGCTTTGTCTGACCACC

>H1000_P1_Alu_Locus_93_consensus_sequence_NA07346_hg18_chr4: 148273400-1

GCCTAAGGAGAGGGACTTGGTTTTATGTCGCTTGCATTTGGTCTTAAGAGTAAAGCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATAGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTAAAGCTTCCATTTAATAGGACAAATACACATTTAAAAATGCAGTGTTTGAAAACCACTGGCTAGATGATCTAAGTGATCTGTAATGAGGCCTCTCCAGCTCTGACACTTTGTAATTACAAAATTTCTTCAACTTGCATGTACTTTTCAATACCATTCTCACAAAGCAAAATGCACAGACATTTAACTCCAGTTTTACCGAAAATATGAGTCAACATGAAAATTCTGGGAAGGCTGAGTATGAAAAGGTATAAATGGCTTTGATTTCTTTTCTTCCAAATGAAGCTTTCTTTTTTCAGATTTTTTAAGAGATGACAGGCAAAGAGTATGAGTCTGGGAAAGTAGCTTACACTAGAAAAAAGGAGACCTCATGTCTATTCACTGTCAAACACGTACTCCCTGATTTTGC

>H1000_P1_Alu_Locus_94_consensus_sequence_NA12003_hg18_chr9: 74640439/40

TTATCAAATTAGTACTTAAGAATGGAAAATTCTGACTTATAAGATCTAAATTCTAATTAAGGCTTATTGTTATCTTTATTGTTTTAAATGATAATATAATGCTATAGCATGCTATTCATCTGATATTTTTTCCATAATGTGTATGGCCACCCAGTAAACACCTACTGAATATCTACTGAAAAATGAGGAACTCTTTTGTTGGAAAAATATAAAATATTCATCACATAAGCAATAATGTATAAATGTTACAAAAAAGGCCGAGGCGGGTGGATCATGAGGTCGGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCTGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTACAAAAAAGTAGTACATTCATTCTGCCTTGTTTAGAATATGTGAAGCCTTTGCAAACTAAGAAACATGGAAATATTTTGAACATTAAAATGGTAAATATTATGGGAAAGTAGAGCACATTTGGACAATACAGATTTCTGGCCACCTC

>H1000_P1_Alu_Locus_97_consensus_sequence_NA12003_hg18_ chr1:4188310-1

CTGCTAGAAACTGCATTGTCCTCATCACCAATGAAGTGGTGTGTCGCTGCAGAAGGAGGTGGTGTtgttgtaggactttctccttagttcaactaaaaaatgggttctagtcacacagccaggaaacattaggcccgcagacacatagaagggtgagaaaaGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAGGGTGAGAAAAatggaatttattgggcgaaaaaggaaaaacagaaagctttcagcagagtaagaaggaagcctgctaacctgctcccaccctgccacacaggaactcaagggactgggctcctcccctctgcacgtggcacgaatttccgtggctccaccccctttctcccagtgtgcaggcccgtgggaggttctccagggaaccttggctgtctcaGTGCGTCGGTGCAGAAGGAGGTGGCGCCTGGGTGCAGAAGGAGATGGCGCGTCGGTGCAGAAGGAGGTGGCGTGTCGGTGCAGAAGGAGGTGCAGTGTTGGTATTAAAGGAGGTGGCGTGTGGGTGCTGAAAGAGGTGGTGTGTTGGTGACGAAGGGTGCACTTCCCCTTCTAGAAAATGCCAGTTCAAGCCTTTGtttctgatgacttttcaggagctctttgtgtactatttctttcttagtttattttt

>H1000_P1_Alu_Locus_99_consensus_sequence_NA18563_hg18_chr10:67754654-5

CAGCTGAGGAAGACTGCCAGGCTCTGTTTGGGTTTACTTCTCTGTGATTTGGTCCAGAAAATATCTCCAATGTTTTGTTGTAAAATTATGATGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGATGTCTCAGAAGTTGTAAAATTATGACAGGGTATCTTCATTTGGCTGTGCTTGGTTCTACCTTAGTTCCTTTTGAATCTCCATATCCAGTTTAAGCATGATGATAAACTAATTAAAGCAAACTGAAGGCCAACCGGCATGCATCGGGTTAAATGATGGCTTCTCAGAGCATCTTGTCATCATGAAACTGAAGAGTTCCCTGATCCCCCATGCAGGACATGGAACAGGTTTGTGGCTCACTTGTTCAGTTGCCATCACTGCTCAAACCCCTTGCAGGAAGGGGAGCATGCAGATGGGCAGGTGCAGAGGCTGGGGCCAGTGCTTTGGGCTCTGGCCCTGTGGTAGT

>H1000_P1_Alu_Locus_100_consensus_sequence_NA18504_hg18_chr4:159277909-10

TGTAAGTTATTAGCTGATAAACAAATAAGTCCATGTGTTTTTGCATCTGTCTGTCTGAAGGGATGCTGGTAATGATAACGATTCTCACTGTCTTTTTCCCTTTTTGAAATAATTAAAATAATTGTTGAAAATGGAACTTTTTTCTAAATGAGATATCCAATGAGGTAACTTGGATTGAAAGAAATCTTCCAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCTCCAGAAAA

>H1000_P1_Alu_Locus_102_consensus_sequence_NA11831_hg18_chr3:157722567/8

TTTGGTGTCCTCAGTGGGAAAAACATCACCAATCCTCACTAAAGTTTCATAACATCTTTCAGAGGACCAATATCTCTGAATGTTATTCAAACCGACTAACAAAGATTGAAAACTAATAGCCAACTGCTTTTTGAACAATTGCTTCTTATTAGTATTAGAATTTCTGAGTTTCAGTATATACCATGCATGTAAAGAGTGGTTGGTTTATCAATCAATCTTTTGTAACTTTTCCGTTTTTGAAATCTTGTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATCTTGTATGCAGTGCATTCTCTTTCTTAGGATTGGGTTACAAGTTCTATTTATGTGTATGTGTGTGACACACACATACACACCATTTTCAGAGACAGACTTCCAAAAGTTAAAAAAAATTAAAAAGAAAAAAGCAATTATTTATTGAGTCCCTATCCATGTTCAACACCATAAATCTCATTGTTGCTTTAACCTATGGAAATACAAGCAGATTAGGGTTTTTAAAAAAGTAGATGCATAGTTTTTATACTGCTTTCCTCATACCAAAGGAAACAAAAGTGTGTTGGAAATAAACAGCTTTAACTGCTTTACAAATGAGAAAAATGTTAGCAGAGATAGGAGA

>H1000_P1_Alu_Locus_107_consensus_sequence_NA07347_hg18_chr4:18222902-3

AGATAATTAATGAACCGATTTGCCCAGCATGTTAAAAACAATGACCACAAAAAATTCCTCAGATCTCTGCTTCTTACCACTTGATTATGTTTTATCATGAAAGTGATAATACATAAGATTGGCTTCATGCAAATTCAAAATTCACTGATTGTTTTCTACAACCATTAAAGTATAACAAAATGTTTGGTGCAGATAGACATATTACATTACAACTTTAAAATAGAATATTATTTACATCATCATTTGTCACAAAGTGAAAAGATGCATATTGTCAATTAGTTTTCAAGAATCCGTTTTTCGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCCGTTTTTCTTTTATAAAGCTGCTGTGAACCATGAACTTAATCTTTAAAGATGTTTCAGTGGTAATCTGCTACAGTCTCAATGTTTGTCCCCTCCCTGGAACCCCCCAGATTTCATGTGTTGAAATCCTAACTCTCAAGGTGATTGTGTTAAGAGGTGGGGCATTTGGGAGGGTGATTAGGTCTTTAGAGGCCCTCCTAAATGAGATTACTGCTTTCATAAAAGAGCCCCAAGAAGCTCTATCACCC

>H1000_P1_Alu_Locus_109_consensus_sequence_NA18504_hg18_chr10:67990091-2

CGTGAGCGAATTTTATAACTTTTTGAGTCTTGGTTTTCTTATCTGTAAAACAGTAACCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGGTCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACAGTAACCTACCTCATGGCACTGTTGTCATAATTGAATTGCCTACAAAGCACTTGATTCATAATAGTTGTACAATAAATACTTTAGTAGCTATTATTCCACTGATACCAAAGCTAAACGAGTAAGAAAATTTGTCTCTGTATCTTGCAATGTATGGTTATTGCAGAAGGT

>H1000_P1_Alu_Locus_111_consensus_sequence_NA18504_hg18_chr8:32862090-1

AGAGTTGCAATATGTTGCCACCTATTAATTAAATCTGTACTCTGGTGAGTTGGCCAAGAGAGAGAACATTAAAAAAAAAAAAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGCAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCCGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAATAACTAAGAAGGATGAGGAGCATAATAAGTCTAGGAAGCCACTTGAGTAATCAGAAACTTTCATGTAGAAATACCCCGGCCATACCTTTTTCCTAGGGGCTGTGAGAAAACTGCAGGGAAGTCTGAAGGCCAAGAAAGAACCTAAAATTTTGGCTGGTGAGTCACCACTAAAATATTACATAGCCTCAAAACATGTTAA

>H1000_P1_Alu_Locus_113_consensus_sequence_NA11881_hg18_chr1:224063056-7

TTCCTACCTGTTTCACCATCACTGCAGTTTTAAGAGTAACGAATGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGGCCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCTCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCaaaAAAAAAAAAAAAAAGAGTAACGAATTTGGGTCCCCTGGTGAAGTGGCCAGAGGCAGAGCTTCTGTGTGAACTATTTGGAGGGGAGGGGAAAGAACTCTCCCAGACTGCAGGTTCTGAAAGGAATACAGAGATGTCAGAGACTGCAGTTGCAAGAGAAAGCTTTT

>H1000_P1_Alu_Locus_116_consensus_sequence_NA07347_hg18_chr8:51555374-5

GTGATGCTACATGTCGGGAGCTTGTTAATTAGCCTGAGCAGCTCTCCAGCTAAACAGAAAATAAATTTAAATAAACCAAGCATTATAACTCCAGCCATTACAGTGGCCTTACACATATTTCTCCTTGTATACTTTTGAGATATCTCAAGTCATCGAATGACAATGCCCCATTCATTCCGAAAGAGACTACACACACCTGATTACAGGCTGGTCCTCACATTAAATTTGTTCATGTTGGAAAAAATCTCAAAAAAGAAAAAGACGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCATTGCAGTCCGCAGTCCGGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAGACGATGACCATACCCATCACTAATTTTAAGCTCC

>H1000_P1_Alu_Locus_122_consensus_sequence_NA18504_hg18_chr11:105675691-2

CGGGAGGAAAGGGGGCTTTCTGGATGAGGCTAGAAACATTCTGGTGAAAGCCTTTTAATTGGGAGAGGCTGGAGATCCCTGGTAGCTTGACTGCAGTTGGAGTAGCCAGGATCACCCAGTCCTAGGGCCCTTTCACTTAGGCAACCATTGATCCTCTGGGGAGCCTTCTTTCCAAATCTTAAGAAGGACTTGGTCTCCTGGTTGACCTTTAGAGGAGATTGTCCCTCTTTTATAGAAGTTGATGGTACTTTATTCCCAAAATGTAATATTGCTTTCTGAATCTGATCCACATTGATAATACCATATGTTTTGACTCATTTCTCAGTCCAGTAAAATGTCAGTAGTGAGGAGGAGCCTCCTGTAATCCATTTCAAATGGACTGGGTTTTAAGTTGCTCTTTGGGGCAGTGTGAATCTGAAAGAGTGCAATAGGAAATAGCCTTATCCAGGTTTGCTATGTTTCTTGAAATAACTTTGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAGAAATAACTTTGCCAAAGTTATTTTAAGGGTATGATTCATCCTTTCTAC

>H1000_P1_Alu_Locus_123_consensus_sequence_NA18953_hg18_chr11:4707790-1

CAACCCAATAAGGGAAAGACCAATGGGAACACAGTCCTTTGGGGAATAAAAATTTGGGTAAACCACCAGTCAAAGTGAAAGCTAAAGAAAAGGTGATGTGTATTAGTTTAGCGGGCTTAAAGAAAACGATAAATGTAAAACATTGTCTCATGACCAGCTACAAAAATGAGGGCTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGGGCTGTATTATCTATGCATTT

>H1000_P1_Alu_Locus_139_consensus_sequence_NA11894_hg18_chr5:108720926-7

GACAAACTAAACTTGTTGACTTCCATATCCTATTTGAATATCATAGTCCTAAACATCCACAAACAACCTAGCTCAAAAATAGTTTTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAATAGTTTTGATGTCAACCCATGTGCCGTAATTAAAATTACCCATCTGTTGCCAAGAGACACAGAAATGGTTCTTGAAAAGAGTAATGTTATAGTTTAGCAGTATCTGGAAATCAAGTATCACATGATACAAAGCAACAGACATGCACATATAATCACAGATTTTGGAATTAATATTAAGAATTACTGAATCCATCCACCCTTGAAATACTGAAACTCCCTCATCTAGCAGTAAGATGTAGTACAAAGAGAAAGAGCCTGTAACTGACTCTTCCTTCATCTATAAAACAAATTAAATAAGTAGGTGTGCAAAGGTGCCTGGCACAAAGATGGCACCACAGTAGAC

>H1000_P1_Alu_Locus_143_consensus_sequence_NA12003_hg18_chr12:14995914-5

ACTTGCATAGTTCTGGCACTTTATACAATTTCCTTGATTGATATATAAGGTTTTATATCTAAAGATATTCTATTCTTTTTAAATGCCACAAAAATAGCAAAGGACAGTTTAAATTCCTCCAGACAAAATCGTAAGTACAAATTTGCCCTTAGCATTTGTCCATCCATTTCCCTTTTCTGGATCCACTTCCCTTTCAGTCTCTCCCCTTCTCCCCTTCCTAGGTTTCCATTGACCTTATAAGGCCCCACCTGGGCATACCCTGGAGTCTTCCTTCATCTCTTATTATCTACATTTACTTGTTTTGTGTTAAAACATTGAGGAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGATAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAAATAgCACCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTGAGGAGAAATCTAGGCAAGTTATTTACCTGTTAAAGGTTAATGACTGAATAGTAGATTCAAAAATTATTCCTTTTAGAGGATGTATAGTCACAGCTTTTCAGAGCTGAAATGAACCACTGGGGTTCATGTAATCATTGAGGATATTGAGATCCAGAGTTAAGAGAATTGCCCAGGTTCACACAGCTGGATGAGAGGCAGTATA

>H1000_P1_Alu_Locus_144_consensus_sequence_NA11831_hg18_chr2:195781360-1

AAGGACTGTTATCCAAAATATACAAAGAACTCTTAAAACTCAACATTAAGAAAACAAACAATCGATTAAAAATGGGACAAATACCTTAACAGATACCTCACCAAGAAATATATATACAGATGGCTAATAAGCATATAAAAATGCTCCACATCATATGCCATCAGGGAAATGAATATTAAAACAGTAGTGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGTAGTGAGATATGGCTATGCACCTATTAGAATGGTTGAAATCCAGAACAATAACACTAGAAATGCTGGTAAGGAGGTAGAGCAACAGGAACTCCCTTTTGTTACTGGTGGAAATGCAAAATGGTACATCTGCTTTGGGAGATAGTTTGACAGTTCCTTACAAGATGAAACATACCATTACCATTTGATCTAGCAATTGTGATCCGTGGTATTTATCTAAAGGAGTGGAAAGCTTGTGTCCACACAATAACTTGCAC

>H1000_P1_Alu_Locus_145_consensus_sequence_NA07357_hg18_chr11:101853522-3

GATTTCTAACCAAGGCAGAATTTAAAAATTGTTCATGAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATTGTTCATGTCCTAGGGCTTCAGAATTTAATGCAGTGAACCTTTCAAAAGTTTGTATAAATCATTCCATATAGGCCTTAAGATGTTCCCCTTTCTTCTGAGTACATAATTCAACCCTAGACCACTTCACCTTAGAGGAAAAGGCCTCTAATATTGTCCCTATCAGGCCCCATAACTCAGCCCTTTCCTGGTCAATTGTAGGAGGACCTGGGAGAAGTTCTGGCCACTTATTCCCTCTAGAGGTAAGACATTCATTTGGGGGCTTTCTGGAATGTCTGATAACCACAGTATAATCATGGGTGTAAAGAACACCCCTTAGTAGCCAGTGGAGGTTCCTATGAATGGGGTTATAAATGGCCACTAATCTTTCTAACTCCTCTCTAAATTTGATAGGCTCTTTCAAAAGTGGAGACAAAAGGGCTTTGTAATTTAGAAGATCTGTTTC

>H1000_P1_Alu_Locus_155_consensus_sequence_NA18912_hg18_ chr18:45935702/3

GAGGCAGCTACGTGGCACAAACAACCAGGCCTCACTTCACACAGTTATAGTGAACCAGGAGTCATCTCCTCCACTATATTATGCCTTTAACTAATATATAGCTCATTCGTAGAATGAAGAATTGGTAAGAACAGTGGTTAAAGTTATGTATTCTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTTAAAAAAAAAAAAAAAAAAAAAAAAGTTATGTATTCTTTATTCTACTATCATCTTTTAAAATATGACCCATATTAGAATATGATTTAAAAGAACTACAAATGGTATTTAACCAGGTACTTATCTTGGTAATCCTTGAGTAAAAGATTTCATTCATTTCACCCTCAGTA

>H1000_P1_Alu_Locus_156_consensus_sequence_NA12828_hg18_chr11:126446340-1

GCACAGATTGCTCTGTCTACCATCACATCATCAGCATTTCTTCTATTCACACTAGTCCCATCCATCTGGATAGGTTTGTAGTGGAGATGAAATAAATTAATACCTGCAAAGCCCCTACAACAGTGTCTGGTACATAGTAAGCGGTACAAAAGTATTAGTTGTTATTTTTATTTATTCACTGCAATGAATATGTAGGGAGCACTTACAAAGTGTTGGGAAGTGTACCAGGCATTGAAAATATAGCAGTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAATATAGCAGTGGACAATGGCGGCCTGCTTCCTCCTAGCCCTCAAGGAGCTTAGATTCTATGGGCAGAATCTGTGAGCATTCACAAAGACTTTCCCCAGAGGATAAAAAACCTGCCCTGTGAAGTGAGAAGAGCAGTCATTCAATTTCCTACTTCCCGAGGTGAGATGTGAGCTCAAACTGACCTGCTGCTTGAGAGGCAGGGAAGGGGACCCACCCTCTGAGCCTCCCTTTGAGCTTATCAAGGCAACCGATGTCAAAGCTGGTCCCTTAGACTAAAA

>H1000_P1_Alu_Locus_159_consensus_sequence_NA18504_hg18_chr15:87672271-2

CATGCCTGAACCTCACAACTTGGGTGGTAAAATACAGCTGACATTTAAACAACACATGTCTGGATCGTGCAAGTTCACTTACACATTTATTTTCTTCAGCCTTAGCCACCCGAGACAGCAAGCCCAACCCCCGCCCTCAGCCTACTCAACGTGAAGGATAGATATCTTTATGATGATCCACTTCCACCTAATGAATAGTAAACATATTTTCTCCTCATGATTTTCTTAATACATTTTCTTTTATCTAGCTTACTTTAAGAATACAGTATATAATACGTATAACATAAAAAATATGTATTATGTTATCAGTAAAGCTTCTAGCCAACAGCAAGCTATTAGTAGTTAAGCTCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGTAGTTAAGCTCTGAGGGAGTCAAAAGTTACACCCAAATTTTCCTCCCTTCAAGGGCGAATTCGCGGCCGCTAAATTCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTG

P1_Alu_Locus_160 is a deletion from the reference genome

>H1000_P1_Alu_Locus_160_consensus_seq_indel_upstream_NA18537_hg18_chr18:43178721-2

CCCTAAGTACCAGGCAATCGAGGATGATTGATCACCATCAAGAGAAAGTGTGGTATATTCTGAAAACTGAAATTGGTTCAAGTTTAAGACAAGTGTATAAGAGAGTTATCAAAGAATTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGAATCTTAGATTTTTGTCTACTTGAAAGTTGATCCTAAGGAAGTGCAGACCTTGGTTGCCACCTAAGTTCAGATGCTTTAACTTTTTTAAAGCTATGCTATTTAAATTTTTTAATTAATATTCTCTCTAGCTCAAATATGCCTAAAGCTTAAACAGGGGCTTTGGGAAGCAGACGGGTAATGTAAATGAGTGGCTGCCAGCCAGGTGAGGACAGTGGCCACAGGAGGCTGCACATCCTGCCCCAAGGCGGCAGTCCCTACTCAGCACCAGCTGGCTGTCTGCTGGAGGGAATGTTGCTAGATATCCTGATATTTCAAAAGAAGCCCCAAATCGGAATTTTTATGGGCAGGCTCCTACTGTTAAAATATTTGTGACGAATTCAAGATTTTTAAAAAGGCACTGCCAAACTGAACACTACAGCTGCTAGTTT

>H1000_P1_Alu_Locus_161_consensus_sequence_NA18945_hg18_chr3:84037705-6

GTGCCTGGATGGACTCTAATAATTTGTATAGGAAAGAAAGCAAAGGCCTTTTGACCTGCTGTCCCACTTGACTAGTTGCACTTCCTATGTACCCTCCCCAATATTAAGTCCAGCTGAATCAATCTAAGAAACCATCTTGTTTAATCCTGCTAGTCTATTGTTAACCTCCAGGAGCCATCGGTTTTGCATACTGGCCATATAGGACTGACAAAAAGGGCTTTAGGGGGACGTAAAAATACCCCTTTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAAGTGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAATACCCCTTTAATTGTTCCCTCAACCATAACAGTGAGCTCTCAATGCCTCCCTGGAACACTTTTGCTTAAACTTTGATATAGAGCAGTGATGGGACAAATTTTATATTGAGCTTGGTGAATTAACTGGTTGAAGACCACATTTAGTCTGTGGAACCTGTAAGGGAAATTATGCCCTATTTTCACTCAATAACTACTCAAGGGACTTACTCAGACAATCTGTCTGGTACCATTTTCCAAATTGTTACTCAAACTTCACTTTAGTTTTTTCTACCAAACATGTCCATGTGCTCCTAGCTTTGCCTTCAGGCCCATCAGAGTGCTATCTGTATCCATCAGAGGGACTACTGCAGACAGTAA

>H1000_P1_Alu_Locus_162_consensus_sequence_NA12003_hg18_chr11:24749518-9

TTTGGAGGTAGTGTATTTTTCTTGATTCATGTAATTCATTAGTACTAGTAAGAACAGACTTGAATATGGTCTTAATATATTCTCAATATATGCAAAGTCCTGGCCCTGTGTTGTCTTTGTGAAAAATGTGAACTATGATGTGCTATGGAAGGTAGGTTTCTAACTTCAAGGTATTTGCATCATGTTAAGAAAATAATTCTGAGAAATGCAAAGTTAAAAATCACATGAATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCACATGAATAGATACGATGCCATGTATATACATAAGACACTATAACATACATGCACACACTATTGAGTACTCCATCATTGGTACTCACAACTTGTTTCTCACTTATTCAATAGCCTTCAATGATGTCCTACTGTCTACTAAAGCTGGTTATCATGGACTATAACTCTTTATTAAGAAAGGTTGCCTTTAATACACAGGTTACTAATTTATGAGGACTAGGTTCTGCAATGTGAAAGCTTTCTATAGTATCAAATCTATATTTCCCATGAAAAATTAAAGCAGACAAATAAAAATAAACAAAATCTGAAAATTCATTGCGGCTCTAGGTCAGATATGACTTA

>H1000_P1_Alu_Locus_163_consensus_sequence_NA18537_hg18_chr2:105819157-8

TCTGTTCCCTATGAAAGATACTCCATGAAACTGAAAAAAAGAAACTATTTCGCTAACAGTGCAGATATCAACGTACAGATACAAGAAACACGAAAAAGCAAGGAAACAATAAAACCTCCAAAGAAACACAGTAATTCTCTAATAACAGAACAAAGAAAAGGAAATCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCCAGGGGGCGGAGCCTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAATCCATAAAATGcCTAAAAAAGAATCTAAAATAATG

>H1000_P1_Alu_Locus_168_consensus_sequence_NA11881_hg18_chr6:124865259-0

TAATGCCTCCTAAAGGTTAATAGTTCTCGGTAGAGAAGAAACTACATGTAGGCCATTAGGTTTCTGAGATGAAGTGGAGTTCATTTGCTCTAGTCAAGTGAACTTTCTTGTGAGAGACCCAGCAGGGACTGGGATCCCTGAAGAACCTTCAGGGAGCCAATCAGCTCCAAATACCTGTCAGGCTTGGAGAGCAGGAGCCAACCAGGGACATTACAGTCGAGAAGGAAATTTTCAGCCTCCCAACTTCTTTTCCCTCCACCCCCACCTCCCAACTAGATCTCCAACCACAGAAGCCTCAGAACTCTTTGCAAGATGGAGGAGAAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGATgGAGGAGAAGGAGCTGTGGAATACT

>H1000_P1_Alu_Locus_169_consensus_sequence_NA18577_hg18_chr17:12694440-1

GTATAGCCAGTTGCTTTCCACTGCCTTTCTTTACGCATTAATGGGACCTCACTTTACAATCAACAAGAGGACAAAGAGCAGAGCACCATTTTTTAAGAAATTGCGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATGGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATTGCGATTGCCTTACTCAGTTTCATTGGCTCATAAGATAAGGGATCCTTTGCCTTCTTGGGTGCAGTGACCAAGACTGGGTAATCCCTGAGCCCACATGTCCATGGGCAGGGGTCATGGGGATGTCAAGGACTTTCTCTTGCTCTGGCAAAGTTCACCTCTCCATTGGCCTCCACATCACCATGGGGTGGAGTGGAGAGAGGGCCCAGGGGCTCCAGAAAGAGAGTCTCACCCTCCTTTTTCCATTCCCTTGGCACCAGCACTCACAGCCTGATCTCCCGCTGATGTCCACCTGGAGTCACCAGGATTG

>H1000_P1_Alu_Locus_170_consensus_sequence_NA70347_hg18_chr2:157736386-7

CTCCTCAATTTTGCCATGAGAACATGCTTAAGCTCACCTGCTGAATGATGAGAGACACATGGTCTAGTCACTTCTGTGACTATAGCCATCAGATATGCGAGTGAGCCCACCTGAGACCAGCCCAGCAGAATTCAACTTGATTTGCTGACTTGAAGGCTTGTAAGCTTAGTAAAGGCTATTTAAGACATTAAATTTTATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACATTAAATTTTGCGGTACTTTTATCATGCAGCATTTATATGCAA

>H1000_P1_Alu_Locus_171_consensus_sequence_NA12003_hg18_chr6: 44792048/9

GCTTATTTTCAGAAGCCATGTTTTAGAAACTTGATAGCAGCTCCATGTTCTTGATAACTGTGCCTCTTGGAGGCTGCACAGACATTTCTGTTGACGCTGGACTGGGTGCTCCCACATGAGCTGGTTGGATCAGTCAAGTGCCTCGTGCCCTTTTCCTTGTATTTTGGGCTCATGGAAACCCCAAATGCTTTTTGCCTCTGCCCTTCCCTCTAGGTTGAAAATCTGTGTATTTCAGAGAAATTTTATCCATCTGTTTCTGATTCATTTACCCCAACTCATCATGATATTTGTTTTGCAAGAGATATTCGATAGCTAAAAAGTTATTTTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAGTTATTTTCAAGTTCTTCATAGAGAAAGGCTTATGTCTTCTCGTGTACAAAAAGAACATCTCGTCCCGTAAAAGCACCTGAATTCCTAAAATAGTCAATAGAGAAGCCA

>H1000_P1_Alu_Locus_174_consensus_sequence_NA11894_hg18_chr2:11271158-9

GACCATATAACCCACAGAAGATAAAATATTTATTACCAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAATATTTATTACCATGCCTTTAAACGATTAAAATTTGCTGACTCCCACTCTATACTCCAGAAAACAAACAATGCCTTTTTTATTTTCCATCTTCTATGTCT

>H1000_P1_Alu_Locus_181_consensus_sequence_NA18870_hg18_ chr17:14358654/5

CCATAATACACCCAAGGAAGTAGAATAAATCTAAACAGAAAATTAAATCAATATCTTAACGTTTGTTAAAAGAAAGATAAAATGAAGAAGTGGACTTTGTATTCAAGGGCAAGAAATTATCATTTGAAAAATAGTTTTAAAAGAAACAAGTATTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAGTAGAAATCTTGCAGGTAAAAAAATAGTAAATATAATTAAAGCTCAA

>H1000_P1_Alu_Locus_185_consensus_sequence_NA18504_hg18_chr18:56925976-7

TTGTTTTTTAAAaTGAATATAATATTGATAATAAAAGCCAACAAATATTTCATTTAAAAAGACAACTATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAACACACACACAAAAAAAAAAAAAAAAAAAAAAAGACAACTATAGATTAACCTCACTTACGAATATTAACATTAAAAAAATCCTGAGTATATCAAGCCAAAGTCAACATCAACTTAACAGGTAACAACTCACTGGAGTTTATTTTAAAAATATGTGAATAAACTTGGTATCAGGCAGTTATAGTCAATTATATTAATAGATCAGAGAAACTTTCCTGAGGGGGAAATTTTCATGATCATTTCCCTCTAGATACAAAAAAAAAAGACATTTGACAAAATTTGGCAGATTATTTATTAACAGGATAAATACACATATCACTTTTTCATCACAACTATTTAACATTCTACTGGAGATATTTACCAATGC

>H1000_P1_Alu_Locus_189_consensus_sequence_NA18504_hg18_chr2:50570168-9

ACACCAATAATCTTCACCAATGAATCCACATAAAGGTGCAGATTTCTTTTCAGTGTGTTGCTGCAGGTTGTCACTAGCAGTCAATTGAGATTGATATGAGCAACGCAACTTCTATCTTCTGAGCTATGGTAAAGAAATGTGAAACTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCTGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGAGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTGAAACTGGGATAGCTGTGCAGGTCAACCTCCCCTGAGCAGATTTCTCTCATCTGTAAAAGGAATTGGTCACACCAGACAATCCCCAAGATCACTTATACTTCCTAAGTTCACATGATTCTAATGGTGGGAAGAGAGATTTCAAATAATATAGTTGGAGGGAGTTGATAAAACTAAATATAGACAACCCATGGTTAATGTCAGAAAAATTCAGAAACAAGTAAAATGGGTGAAGGAATTTTTAAAAAATGCTTTTAGTAGAGAATAAAGAATTTACACTCTGCTGAAATACTGTGAGCTGGGCCAAGAACCACAGGGAAGCAGAGGGAAGAACTCCCAAACCAAATGTTGGATAGCAG

>H1000_P1_Alu_Locus_191_consensus_sequence_NA18572_hg18_chr15:60873090-1

GCTCTTCTATTCTCCCCCAGTATGCGAGTCTTTTGCTTTGCTTTTTGTCTCGGAATCATTTTTCAGGTCAGCTGTTTTGCAGGCTGCTTGAGGTACAGGATAAAGCATCCAGGCTTGGTGGCTTTTCCCCTTCCCTTAACTCTGGTTCATAGGACACAGAGCTCTGTCCTGTTTAGAAACTTGGCAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACTTGGCAACAGACTTGAGGGGCGGGCAGGGGGGACCCTCAACTGGAAGCTGCTGCCACAGAGGCTGCTCTGTCCGTGGCCCTCCCTGAGGCCAAGCTACAGTCTGGCCTTCTCCCATAGCCCACAGGGCTGTCCAGCCTCCTGGGACTCCACAGACGAGGAAATAAATCTCTCAGCTGGAGGAAGGCATTTGCCTTCCTTTCAAAGCCCTTTCTTGTTATTGAAGTTATTCTTGCCAAGTTCCCCCATAAAAGGCCTTATAGCGGGAGCAC

>H1000_P1_Alu_Locus_197_consensus_sequence_NA11831_hg18_chr1:188149973/4

TTCATTGAGAACTTTAATAATAACTATTCTGTTATTATTACAAGTTTAAAAATATTAATTTCCCTGAGTGCAAATTATAGTAAATAAAGGAAAAATAACCATATGAAATAATAACAAAATATGTTGTAAAATTTTTAATTTTAGGTAGGAATTAATAGGTCATGCTAGTGTTACTTGCAGAAGAAAAAGGATTTGAGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGATTTGAATAAAGCATAAACACTCGTTTTAAAGGCATCAGAGAAAAGTAGATGCCAAAAAATATTTTAAACTGAAATTTCAGAAAGGAAAGATTACCAAATGAGGAGAAATTTTCATTCAGGTTTTTTTC

>H1000_P1_Alu_Locus_199_consensus_sequence_NA11881_hg18_chr11:130181038/9

GACTAGCTGTGTACGAGGCTCTGGGAACACACAGTGAGCAGCACAAGCAGTCCTGCCTTGGGAGGCCTGGTCTAGAGGCTGCACGTAAAGACAAGGACAATGTGGCTTGAGAAGTTCGTTAAAAAGAAGCACAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGACCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCGTGCGCCTGTAGTCCCAGCTACACGGGAGGCTGAGGCAGGAGAACGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGAGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAGCACAGAGGTCA

>H1000_P1_Alu_Locus_204_consensus_sequence_hg18_ chr17:10019291/2

CTTCTAGAACTGTGAGGAAATAAATTTCAGTGGTTTAAGCCACCCAGTCTATGATTCTTTTTTGTGGCAGCCCCAGCAAACTCACACAAGCCCCTTACCCTGGGCTTGGGTAGGCAACTTATTTACATAGTTCCACATGGGATCAAAACCTTGAAAAAACATAGGGACCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATAGGGACCTAGGGACAGTTTGCTTGTCCCATTTTTCTTACTAACATGTATTCCTAGCTAAAGGGTTATATAGTTCACTTCTTTACCTTATTATCATTAGAATGTGAACTCCAGGCCGCGCGTGGTGGCTCGTGCCCATAATCCCAACACTTTGGGAGGCCGAGGCAGGAGCATCACTTGAGCCCAGGATTTCGAGACCAGCCTGGGCAACATAGTGAGACCCCCATCTCTATAGAAAATAAAAAATTAGCCAGGCGTGGTGGCATGCACGTGTGGTCCCAGCTACTCGGAAGTCTAATGTGGGAGTATCGCTTGAGTCCAGGAGGCCGAGGCTGCAGTGAGCTGTGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGAGACCCTGTCTCAGAGAAAGGAATGTGAGCTGCATGAGGGCAGAGCTGCATCAGGTCAAAGCCCGTGAAGGCACTGGCAC

>H1000_P1-Alu_Locus_205_consensus_sequence_NA12043_hg18_chr9:30724684/5

TCTAACTTTAAAAACTTGTATAAACATGTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAACATGTTACAGACCAGTTTTATTATGTTCTCAACATGTACTTTGAAGCTAATAAAACTGTAATTTAGAAAATAATTTTACTTGTAGTTTAAACTCTGAATAAAGTGCTATATTTACTTTGTTACTGTCTGCCAATCTGCAAGACGATCATGGCAAAATTTAACTCTAAGATATAGATGCTTTTTAATATCNTAAACATTATTTTGTTAACTCTTAAAAATACCTAATGTAATTTTCTCTGACAAATAACTATA

>H1000_P1_Alu_Locus_206_consensus_sequence_NA07346_hg18_chr10:106427928/9

CCTGGGCATAGACCCATTGAAGCAACAATAAAGGGAGTGTACTTTAAGAATACACGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCTTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAGTGAGCCAAGATTGTGCCACTGCAATCCGGCCTGGGCTAAAGAGCGGGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAGAATACACATGGAAGACATCTTTAGGCTTTAGTAATAAAAAGCCCTATTTGATCAAGGAGGTTCTCGTTATTTGGGATAGACTGGTTGGGTGAACTAGACCCAGTTCACACAAGTGACTTATAGAGAGTTCAGAGCTGAGAAAGCAGCTGTTAAGTGCGTTCCTATGTGTAAGCACGTACACATCCCTGGCACATAGTAAGTGTTCTGTCAATATTAGTGAATATGACTATTATTGATGAAACAGAAGTAAAGATTAAAAACCATCTGAGTCTGGTAACCAAATCCCTAGGTTCAGAGTTTCTTTCATTTAGGATAAAAGACACTGGCCAGTGCTGGAAAGTGAGTTAGACTGGATGTGTCCACATGTTTGTAAATGTTTTACCTGCCTCTTTGATGATTCTTCTTGGCCTAACCTAATAGGGCATGTGCTCAGGACTTGCTGCCCCTACTGTTAGCCTCCTGAGGGCAGGGACCACATCTGTCCCAGTATTTCCTAGCCAGTAGAGTATGATATGCTCAAAATATATTGTTGCAATAATTGAATGATATTTTCAAAATGAGTCAGCAACATCTGTGGTATCCCTCAAAGTTGATACTATGGAGGTTTAAAGAAATAATAGGAACATGCCCATCACAAAGCCCTGCTCTGTTTCCTCCCCTCCCAGTGTTATGTTCAGCTCTTGGAGCCCAAGCCAAACAAGAGAATC

>H1000_P1_Alu_Locus_208_consensus_sequence_NA11881_hg18_chr7:77575128/9

CCTTACAAAGCATCTTAAAGAATTAGAAAAGCATGACAAAATCAAACCCAAAATTAGTAGAAGAAAGGAAATAATAAAGATCAGAGCAGAAATAAATAAAATTGAAACCAAAAAAGGATACAAAAGGTCAACAAAATGAAAGCTTGGTTTTTTGAAAAGATAAACAAAATCAATACTAAGAAAGAGGGAAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAGGGAAGaCCCAA

P1_Alu_Locus_209 is a deletion from the reference genome

>Del_ref_H1000_P1_Alu_Locus_209_NA12043_consensus_sequence_hg18_chr14:44083830/1

TGTTGTTTTCNTCTTTGTGTTAAGTGCCTTTTATGATTTATTAAGAATGTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAGAATGTTATAAAAATAAATGTAACAGGATGCAAAGAAAAGAATTTTTGTCTGTACAAAAGACCACAGGTACATCCCAAAGGGTATGCTAGAACATATGCATGATTTACAAAGAATTTCACAGTTCAAACCCCTCATTCATATTGAGGTTACAAAAGGATTTGAATTTGAAGGATATGAAAGAAAGCATTTCTCTAAAGAGAACTGACGCTCTACTGCTCTGGGGAGAAAATGGGCTTTCATCTTGGCAGAAGGATTTCAGTGAGGTACCTCAGAGTACTTAACGTGTCATTTGCAATTGGAGGACCTAGTGGTCTGTTGTCTATTTATACCTGTGCAATCTACATCATGATTTACTCTGGCTAGCTGTTCTAATGGCAAAGCAAGGAAGAATTTCCTGAGTTGCACATGGCTTGTACCCTCAGAGAATGCATGA

>H1000_P1_Alu_Locus_211_consensus_sequence_NA12828_hg18_chr13:41838088/9

AATAGTTTTTCGGGCCGGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGTTTTTCTATCTCTTCTTGAGCAAATTCTGTTAATTTTAATTTCCTACAATTATTATAGTCATAAGTTTTTTACACAGTATTCCTTTATGAAAAAATCTGATCTCTATGTAGGGTTATAAACTCTCTAAAAAATTCCCAATATTATGCAGTTGTGCTTTCTATTCTCACAGGTTAG

>H1000_P1_Alu_Locus_212_consensus_sequence_NA18504_hg18_chr1:237492890/1

TCTCTCTCTCTATCCAGTCTGCTAAGACAGTTTTGAATTACTTAAGAAGGAATTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGACTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaagaaggaattggCTGTCCCATCATGTTCAAATGTCTCACCCATGTTGAAGGAGAGGGAATAATACAGAA

>H1000_P1_Alu_Locus_213_consensus_sequence_NA12043_hg18_chr13:104512921/2

TGACAATATTGAAATGTTTTTAACAATAAATTTATGCTAGCATATAAAACAGCAGCAAAGTCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAACAGCAGCAAAGTCAAATTTGTCAGATAGGAAGCCTTCAGCTTTTTATTTAGCAAGTGATAGATGTGTATTGTTAAATTATGTTAATGTTTCAATGTTATGCTGGATTATGTATAATTTATAACTTTTGTGGCAAAAATGCATTAATGCAGACCAGTTGATTAGATCATTTCCAAGCTAAAATGTCTAACAATATTGCATGTTATTTTTATTTTACTTATCAAATCAGTTCATGCCATGTGAAGTTACATAGCGGGTGTCTTTTAGAAGACACTGAGATGCG

>H1000_P1_Alu_Locus_214_consensus_sequence_NA12828_hg18_chr3:113936195/6

GTTTGATTTGATTTTTCTAGATATTCAAGAGATTGAGATAGGATCTAGAATATCAAATTATTGATTTATAATGGATCATCAGTGGCCCAAAAGCTCATGTTCGTCTTTCAAGATTCCACCTTCCTGGTAATAGTGGGCCTGGTGGCTGGTAGTCAAATGACTCTTTGGTGACTGTGAATCAGAGTAAAGTGAGGTATGCACTCTCTCAGATCAAGTAATAATAACAAAGTATGATAATAATCACTAACACTATTAGATGTTTACTATTTGCCAGGTCCTGGGCTGAACACGGTGCATAAACTCATTTAATATCTAAACTAGTGATATTTCCATCTTACTAAAGAAGAAGCTGAGCCTTCTAGCCAGTGAGTCACTTGTTGAAAGTCACATGGCACAGGTTGAGCTGTGATTGAGGCCCACACAGTAGTGAGCATTATAATACCCAGGCCTATAGTCCTTTGGCTGATTGGGGCCAGATGTAGTTCAGATTTCTGAATTTTTAAGATTTGAGAGAAGTAAACAGTTCATATACTGTACATTAAAACACCCCTAGTGGGTACTCTACCTTTTAACGTTCCTACTAGGAATATGGGCAGCCTCTCATGATTAAACACATTAATTAATATATCTGTCATAAAAGATAAAAATACTCACATTaagataataaagaGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAagataataaagaCTATGTCCTCATATTGCAGGTAAACGTTGTTGCCAAATAGGTCTCAAAAGAG

>H1000_P1_Alu_Locus_216_consensus_sequence_NA18944_hg18_chrX/Y:1643502/3

GAGGCTGTTCATGAGCTTCCCCACCCACACCCTCAGCCCCAGTTTTTAAAAATTTTTTTGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTAAATTTTTATCCTTTAAGTTCTAGGGTACGTGTGCACAACGTGCAGGTTTGTTACATACGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTACACTAGGTATATCTCCTAATGCTCTCC

>H1000P_P1_Alu_Locus_217_consensus_sequence_NA12043_hg18_chr15:33883600/1

ATTGATACCTGCAGTACTGAGTCTATGTAATATTGAAAAATTCCTTTCTAGTTATAGCATCTTAGCATTTCCACTTAGTAACATGTCGTTTCCTTTATATCAATCTTACATATTTATTGTTTTATTTACTGCTAGGTATCTTACCATTNTGTTGCCTTTTTAAATTGAAAAGTTTTGAAATGTTCATTAAAAATACTGAAACTGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAATACTGAAACTGACATATAAATACAGAAATCACATTTTGAGACAGAAAAGAGATTACAAATAAACAACAC

>H1000_P1_Alu_Locus_218_consensus_sequence_NA07357_hg18_chr2:233554137/8

AAGGAGGATGTCTCCTCCCCAGGGCCGAGGGCCTCCCAAGCACCTGGAATTGCCTTTGCAAAAAGTATAACTGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGTATAACTGAGGAAATTGTGACAGTGAAAGAAATCAGACCTAACCAACTCCACCTTGCTTCTAACCTTTAAGCTGTCCTTGTTCATTCCTGGGCATAGGCCAAACTATAGGAAGGAATTCAGTTCACGGTTTGACTCTGAAACAAAATTGCTAATAGCCCTTTCCCGAAAAGACCCCTTTCTTGCCTGGGGACCAGTCTGCCTTTGCAGGACTAACAAATTAGCTACACGAGTAGAAATTACGGTTTAGGGGTCCTGCAGCCTCTGACTCCAAGAGTCTGACCCTCCCCACGTTGCTCCTGGGGATAACATCACTATTGTAAAACCTAAGATCAGTGCTTGAGATGTTTTGCAGGCCCTGCACTGGATGGATCAGCTGACACCACCCAGACCGTGGTAATCTGGCTCAACCAGTTCTGCCACCCCACCCAGGAACAGAAGACAGCAAGCAAACCTCACTTCAATCCCTATGATCC

>H1000_P1_Alu_Locus_219_consensus_sequence_NA07347_hg18_chr1:43981512/3

TTCCCATACTTACTCATCTGAAGGAAAAAAAAATAAATAATGGCTGAAAACTTCCTAAGTTTGATGAAAACCATTGACTTACAGAACCAAAACAGAGCCCCCCTCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCGCGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATGCAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAACAGAGCCCCCTTATAGAGCCAACCCCAAGAAAGATAAATATTGGGGGAAAAAACCTAGGTACATCATAGTTAGACTTCTGAAATCTAAAAATAAGGAGAGGCTGCTGCTGGTGCTGCTGATGAGCTCATTTGGTGTGGACATGGTGCCTCTTTAGTGAAGTAGCAACTGATATCTCTGGTGTTCCCTGTGGCCCATGAAATGCCAAGAGAGGTGTCAACACTTAAGAGCAACGATCATACTAA

>H1000_P1_Alu_Locus_220_consensus_sequence_NA07347_hg18_chr13:29502162/3

GATGTCAAGAAAGCTTTTTTCAGTTGTAGAAATTCCTTTAAAATAAACAAAAAAAGTGGGTTGCATGCTTTTGTGATCCTTGCTGTTCTTTTTCTCCTTTTCATTTTCACTGCAAGAATTCATAACCAGGCTAAAGAACAAGTCTTCCTACATAATATaaaagcagtagaGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGACGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAGTAGAACTACTGGTGATATTAATAATACTTCATATTTATAGAGTAATTTTTCATCTTTAAAGTCCTT

>H1000_P1_Alu_Locus_221_consensus_sequence_NA07346_hg18_chr4:104964050/1

CGGGCAGATCACCTGAGGTCGGGAGTTCAAGACCAACCTGGCCAATGTGGTGAAACCCCATCTCTACTAAAAATACAAATACCTGAGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGTGGGGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACGAGGAAGACACCATCTCAAAAAAAAACAAAAAGAAAAAGAATTAGTAGCATCTCTTTGCTTAACCTGTCTGAGATCAGTTGGACAGAGACCAATCAAATATGGCCATGTCTCTATTAAACCTTGGCTCAGCCAGGTTATTCTGCAGGGCTCTTATACTACCGCCTTACCCTGTGTATGAAGGATGCTGCTAAAAAAAATCACCTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATCACCTATGGTGCTGTGTCTATGTTTTGTGGAAATAATATGGCTCAAGAAGACTCAA

>H1000_P1_Alu_Locus_222_consensus_sequence_NA07346_hg18_chr2:141830619/20

AAATATACAACACAACTCCTCACAGTTATATAAAACATATTTGTCTTCTTCTCAAAGTGAGAGAAACCAAAAATGTCATGTCAACTTTAATATTAGCCAAGGTATTTATTTGAAAACTATCTACAAGAATTCTAGGTAATTTCCACAGAAAAATGTCTTCTTAAAAACATACATGTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAACATACATGTTACCTCTTATCATCTCAAAA

>H1000_P1_Alu_Locus_223_consensus_sequence_NA11894_hg18_chr6:163387376/7

ATGATACCTAATTCCTGGGGTTATTATAAGGATGAAATGATACCATTTAGCATGTGCTAAATGATATTAATTCCCTTTCTATTCTCTGAAGAGGACAATCATACAATCACAAAAAGTTAAGTAAGATTTCAAGTGATTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATTCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTCAAGTGATTAAGTACCAAATGAAGGGTACATACCAAGGCTACGTGGAAAAAAGCTCTGGTTAAGAGAAAGGAGAGATCATTATGGGCTGGAGTCAGGAAAATGTTTCATTGGGATGGGGGGACTTTGATGAGCCCTGTGAGATGAGGAGGGGTGAGTGTTCTGGGCAGAGG

>H1000_P1_Alu_Locus_224_consensus_sequence_NA12043_hg18_chr3:179593739/40

CATACTTGTGGTTTATTTTACATAAAATACTTCTCCACTGGTATTTCTTCATTGATTGATATATGATAGCTGATATCAGTGTACATCAATCCAAAATATGCTGTGGTAGATTTTTGCTTAAAAATGGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAATAAAAAAATAAAAAAATAAAAAAAAAAAAAAAAATGGGAAGAAGTAGATTTCGGCAGGCCAATGCTGCCCCTGAGAATAAAAAGAAAAAAAGCCACATAACATATGGTAATCATCTGTTTGAAGTCTTCACACTGCTACAACAGAAAAGAGAAATGGAAAAAC

>H1000_P1_Alu_Locus_226_consensus_sequence_NA18572_hg18_chr9:119430554/5

CTGCCACATAAACCCTTCCTTGGAAACCATAGCATGTGCCATAGTGAGCTTACTTGAAAGTAGTCTCCTGGCCGGGCCTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGTAGTCTCCTAAGAGAGTCAAAACAGCTGCATCCTGAAGAAATAGCCTTTTGAGAAGGCAAAGAACAATCAAATAATAAGGAGATGGTATGAATTCACTGGTGTGCTTACTCCTTTAGtTGCATTATTATAGTATGATTAGACATACTTTGATTAGACTTTGTCTTACTTTACAAATGAAAGAAAAAAACAGACTCAGAAACCTAGCATGATCAGATCAAGCTCACCCAGTGATTAAGTAGAGATGCAAATCTTATGTGATGCCCAATCTGCCCCTCACCATGCCATTCAAAAAGCAGAGTAGAAACAAAGATAAACTGATGTATTCACCTACTAAAATTAAGATTAAATGTTTACAGTTCTCTAGCCTCAGCTTTCTCAATATTCCACATGAAGCTGAAATCACACTTGGGCCCAGTTCATAGAATTATACTCATCTTTCTTCCCTGGGATCTAAGTGTGTTCCCTCCAAATGGAATGAAAGAGATTCTTCATCTCTATCTCAGGTTCAGGTAACACAGGCTTGCCCTCTCTCATCTCCCAGAAATATGAGCCTACTGATAACTCCTTGGCTTTTAAAAATTTCACATTTTATAAGAGTTTTAGGGAAGATTTGAAGAATTTTTTAAACATCTGAAAATAAAATAAAAGTTTGACAATGACTAAATTGAAGGCATTTATAATGTGTCACAAAACAGAAATGGTTTAAGAAAGAAATATATCTGGGTCCATATGCTAGATCTGCCATTTACTAGTTATATCAGTGTAAGCAAAATCTACCACTCTGAGCGCTTCTGTATTTCCTCACCTAAAAAAAAGAGGGTAATATTAGCTACATAGTCCCTGATATAACAATGATAAAAAAATGCATCTAATGACATAGTTATCTTGAAGATTAAATGATATAAAATAGTTGCATACTTAGTACTGACCCATAGTATGCCTTCTATATATATATATCAATTACTATCATACTAGCTAAAGATGATTAATATTTTTAAACTCAATTTTTACTCATCTATTAAATAAAGGTA

>H1000_P1_Alu_Locus_228_consensus_sequence_NA11881_hg18_chr2:139097257/8

TGAGAGCCAGGGCAAGCTATCCTTTTTCTATTCTGCCTCTCTCTGTTTTCATCAACAACAGCTCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGAGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAACAGCTCTGAATCTCTTAAGACAGTGGCTCTCAAACTAGTTCCAAGGTTAAATTCTAACAGTGGCATGCATTTACATAAAAATTAAGTTAATTTATAGAATTTTCAGAAACTAAAGTTTACCTCCCAAAGTGCTTTTTAAACTTTGATGTCTACCATTGCTTGCCTGTCACTGAGAGCTAACAGATGTCAAACCTAATGAATATATAGC

>H1000_P1_Alu_Locus_229_consensus_sequence_NA07347_hg18_ chr18:23351011/2

GCCAAGGAAGTTAGAATCATGTGATGTTAGGCCCTATGAAAACTAAAGACTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACTAAAGACAACACCTTAACAAATGCCCCTGAGTTGTTTTCCAAAAACTTGGATTCCCTCCAAGCAGATCCACTGGCATGTAGACCTCAGATAAAAGGGAACAGAGGACGGAACTGTGACTACTGTTGTAAATTTGTTTCTGAAGGGACTGGAGAAAATCACATCCATGAGCCAGAGCTAACAGTCTTTTATGATGACCCCA

>H1000_P1_Alu_Locus_234_consensus_sequence_NA12043_hg18_ chr3:146170558/9

TCATGCATATTTTACACCTCTGAAGGCTATGACTGAGAAGCAAGTGGCAAACCCAGCCAAGGCTGCATAACTCAGGCCTGAGAGAATATCAACAGAAGGCTACAAAATGCCTTGATCCATCTATGGCTCATCCTCATGTTTAATTGTTGATAATAAATTACAAACCATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTAGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAATAAAATAAAATAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATTACAAACCAATGGCAAAATGTCAAAAAAGACCATATAAATAA

>H1000_P1_Alu_Locus_235_consensus_sequence_NA11831_hg18_ chr21:32320390/1

CCATAAAAGATGTCAAGTACAGATAATAAGTTAGTGACATGTAAGAGATGTGTGAGTTTTTAAAAAGAATGGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGGGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAATGGAGTAGCAAGAGCAATTATAGATAGAAAAGGA

>H1000_P1_Alu_Locus_236_consensus_sequence_NA11881_hg18_ chr2:21650332/3

TTACTCACTGTAGTTAAAAGAATAGCATTCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCAGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGAAGCGGAGCTTGCAGTGAGCGGAGATCGCGCCACAGCACTCCCGCCTGGGCGACAGAACGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAATAGCATTCCTTTCCTTAGTCCTTTCTTTCTGTCTTTGCTTGCTGAAATATCCTCCCCTTTCAACCTAATCAAATTGTATTGAGTAAGACTTCATTTAGATTTTACCACTTCAATTCCAATTTCCTGGCTACTCAAGCCCACGATGTGATCCCTTCCTCTAAACTCTTAAAGTA

>H1000_P1_Alu_Locus_239_consensus_sequence_NA07346_hg18_ chr8:41389615/6

TGCCCTGAACGGTTGTTATCCCACAGAATAGTCTGGTTCTAAACATCCTAGGTGCAGCATGGCCAGAGGACTAATGTTCCACCCAGGGCACTCCACAGAGAACAAGCCCCACTGCCCATCACATTACATATTTATGGGGTAAGTCCAACAGAGGCTAGGGAACCTGGTTTTTCTGAGTAACTAAAATGTGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGTCTTGAGATCTTCCAGGTCCAAGATCAGTGCTAGC

>H1000_P1_Alu_Locus_240_consensus_sequence_NA07346_hg18_ chr5:139575322/3

CTGCAGTTCCTGTTCCTGGGTTATACCCTGGCTCTCACACAGAGAAACCTGGCCACTTTTTAGAAAATCACTTTTTAAATTACAGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAATAAATAAATAAATAAATTACAGAAATACTTTTCCTTTGACAAAGTAAATAATATGCATAATTTATTTGCATATTATTTACTTTGCATTATTAATGCATAACTGCTGCCCAGAGATAGCAGTTAACATTTTGGTATAAA

>H1000_P1_Alu_Locus_242_consensus_sequence_NA07346_hg18_ chr2:213685311/2

CATTAATATGTATTTAGACATACATAGACATATGTATATAGTGAGTTGCAATAAAAATATATTTTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGACTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATTTTTTATTGTCTGTCTGGGTCAAAAAAAAGTTTGCAAGCCACTGAACTACACAATCTCAATACCTTGAAAATAGTTGATGTTCAGTAAATCTGTACTAAGTTGAATTAATGTA

>H1000_P1_Alu_Locus_243_consensus_sequence_NA07347_hg18_ chr5:141738826/7

GATACACAAACCTGGTTGAGAAATCCATTTTCCACTTTCCACACGTGTATTGTTGAGGACATTACCTAGTCTCCTGGAGCCTCGGCTTCCTTATGGAGATAATGGGAGATTTAAAAAAAAAGTACCCCCTAAACTTGCTGCAAGAATAAAACTGAGAAAACACATGGAAACTTTGGGTGCTTTTTGACCTGACACAGTAAGTAGAAGCTGTTATGTCATTTTTCTATATTCACTGTGATAGGTTACACTTCACAAAGCAAGGTTTAAACACTGGGGTTTAAAAATGGGGATTGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATGGGGATTAAAATTTTGATAACNCCTCATTGTCCTCATCAGACCCTCTCCTAAGCCCCTGCTTAGTTTTACTTGAAAGAGATATG

>H1000_P1_Alu_Locus_245_consensus_sequence_NA12043_hg18_ chr10:129080282/3

GGCAGCTGTCATGGCAGCCGTCACACGAGACAGCAGCAAGAAGCAGCCGGTCCACGCCGGGGCAGACCATGGGAAGGTGCAAGGGCTTGGGGAACAGAGGGCATGTTCAGAAGGCCAGATGCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAGGCCAGATGCTGTGGGTGATGAGAGGGTACATCTGGAGGCTCGATTCCTACTCTAAGGGGCCTCATGCCAGGTGAGAGGCCTGGATCGCCTGCAGAGGAGATGGGAGAATCCCTGAGGTTTGGGCATCTTTGAAGCAGTTCACGCTGTGATCCAGAGGCCACTTTATTAGAAACCAGACTGCTATCTATCTGCAGGAGCGGAAGGGTGGAGACAGGCATGGGGCCTTGGGGAGGAGAGTGGGTAGGGATCTCAGACAGACCCAGGTGAGAGGGACCGAGAGCTTACAAGGAGACACAAAGTGAACTGGATCTAGCAGCAGGGCTTCTGCCCAGAGGCCCGAGTTGTTCAGAAGTGGCCCAGGTAGAAGTGGGCCAAGATGGTGCAGATCTTAGAGCCAGTCTGTCAGCGGGGAAGGCTCGC

>H1000_P1_Alu_Locus_246_consensus_sequence_NA12003_hg18_ chr21:36159798/9

CAGTGCCACCCACCATTCAGAGTTGGTGGTTTGGTATGAAAGTTTCAAGACTTCTAGACATTTCTTTTTGTAGATGTCTATCATAAGGGTTTCACCATGTGGTATCCCTAATCGTAATGGATTCACTTTTTTGAAAATCTTTTAAAAATAACATTTTTTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAATAACATTTTTTTCATTTTTATCATTTTTGAAAAAAACCCCATCAAAAAGTGGGCAAAGGATA

>H1000_P1_Alu_Locus_247_consensus_sequence_NA18572_hg18_ chr15:33260906/7

TTTTTTTTTTTTACTAAAAAGCAGAGTTTTGTTTTTATAACTGACAAGAGAATCTGAGGGCAAGAATAGTGAACACAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATAGTGAACACAGGGAGGATGGCTGCTATATTTAGTGCCTGCGTTTACATATGTTGGCACCAAATGAATACCTTAACTAAAACAAAGTGAAAAGTTTGCTGAAGCTTCCAGAGGGAGGCAAAGGAGAAAGAATGTTTAGGTGCTTGCTGGCACTAACACAAATGTAAACACAGGCATGAGTAATGTGACAATGCCCAAATATAAGGCAATCATCGAGACACATCTGTAAATACTACAAAATGTTGTTATTATTTTAACTCTGAGATGGGAAATAGTCCTATCCCCATTTTACAAATGAGAAAATTGAAAAGTTAAGTGACTGCCCTAAGAGCTCAAAGCCAATTGGTGGTGGAACCATATTTTAAGCCTCAGTTGTCTGGCTAGTATCAGTGCCCTTAATCAGTGGGAGTAGTAACTGAGAGAACACTAATGTCAACACAGCTACATTCATTATTTGCTTAAATGCATATTTTTGTATTTTTATATTGCCTTTTTTAATGGAAAATAGATAAAAACAGAATTTTAAAAATTACTTTCAATGCCTATTTCACTTTGGCCATAAGAAATATATATTAAAATTGTTTACTAAAGTATTGATTTAAAAGGACAAGATATCACATTTTTTTCAAGAAAGTAAAGTAGGGCAGGCATGGTGGCTTATGC

>H1000_P1_Alu_Locus_248_consensus_sequence_NA12043_hg18_ chr12:25354215/6

ATATTGGCTCCCTGACTTGTAGGGTGAAGGGCTACTATGGTGAGAAAAGCCAAATGGAAGCCATTAGAGCTGCCTCTACCTAGAAAAATACTAAATGAAAAACAATATCTCATCCCTGGAGGGATTGTGGAGATTAGTGCCACCATCAAGAACTTGAAAGATGCAGGGATGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAAAAAAAAATACAAAAAATTAGCCGGGCATAGTGGCAGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATGCAGGGATGGTGATTCCCACCACATCCCTGTTCAACTCGCCTATTTGGTCTGTGCAAAAGACAGATGGATCTCAGAGGATGACAGCAGATTATTGTAAGCTTAACCAAGTGGTGACTCCAGTTGCAGCTGCTGTACCAGATGTGTCATAG

>H1000P1_Alu_Locus_249_consensus_sequence_NA12828_hg18_ chr8:137131387/8

TTCACAAATGTCTTGTGTTACATGCAGTCTCTGGTTTGGTCCTATTTAATCTTTATGGCATCTGGATATGTTAGCACTATTATCACTCTTTTGTAATGAGGAAACTGAAACTTGGAAATATTGTTTAACTTTCCAAAATCACGTAGCTTGCAAGGTCTTCTGCTTTGTGGAATCAGCCTGTGTTCAGATCTCTGTTCTGCTTCATCTGTCCTTGGAAACATGCAAATGGCTTTGTATTCCTACTGTGAGAGCCTCAATTGAGGCTTCCCTTCCTCGCCGGGATACTGATAAGGTTTGGCTGTGTCCCCACCAAAAATCTCATCTTGAATTGTTTATCCCCATAACCCCCATGATCCCCCACATGTCAAGGGAGAGACCAGGTGGAGATGACTGAATCATGGGGGTGGTTTACCCCATTGCTGTCCTCATAATAGTGAGTGCGTTCTCATGAGATCTAATGGTTTTATAAGTGTTTCGTAGTTCTTCCTGTGTTCATTCTCCTTCCTGCCATCTTGTGAAGGAGGTGCTTCCTTCCCCTTTGTCTTCCACCATGATTGTAAGCTTCCTTAAACCTCCCCAGCCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAgCACTTTGGGAGGCCGAGGCAggCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCGGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACTCCAGCCTGGGCAAAAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAACCTCCCCAGCCCTGCAGAACTGTGAGCCAATTAAACCTCTTTCCTTTATAAATTACCCAGTCTGGACCAGTTCTTTATAGCAGTGTGAAAACAGACTAATACAAATACTACAGCAGCTTCTTTAACTGATCTTCTTGTCTCCAGGTTCCCTTTCTTCCAACCCTTTCTCAGAAGCTGCGGACAGTCCTCATGCCACTCAGTGGCCACGTGCATTTACTCACTCCCTCTGACCAAACAGCCTCAGGACACATATTTACCTTTGGCGTTCACAGTCCTCCAGTGCCCCTGCAATGTAACAGGAAGAGGTTGGTCCTTCTAA

>H1000_P1_Alu_Locus_250_consensus_sequence_NA07346_hg18_ chr5:158649735/6

CTTCGATAACCCATTCTCACACAAGAACCGGAATGATCCTTTTAAAAATAAATCAGGTTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAATAAATAAATCAGGTTCTAAAATTAGCTTACAGTGATGGTTGTACAGCTCTCTAAATACACTAAAAACCATTGAACTGCACACTTCAAATGGGTAAATTTGTGATATGTAAATTCTATCTCAATAAGGCTGTTAAAAAAAATTAGATTGTCATTCTATGCTTAACACCCTTCACTGGTTCCTGACATTTCACGTAGAATTCGCCAGACTGCTTATGGTGATGTACAACATCCTACCTTTCCCACGGGCTCTGCCTGCCTCTCCAACCTCACCTCACACCAGGCCACAGCTAC

>H1000_P1_Alu_Locus_251_consensus_sequence_NA12828_hg18_chr6:102327256/7

TGCCATATGCAGGGTAATAGAAGGGTACTTAATTTCATCTGGAGTAGTTCCTATCTATTAATGTTAGAGAGTAGCCTTTGCTTCAAAGATTTTTCTAGCAACATCAATAGCTTCAAAAAATAAAAGGAGTGGAAAAAAGCTAAAGAATCAAAAGTTGAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATCAAAAGTTGAGAGGAATGGTGGCATTAGGGAAGAGATCAAACCAGAAGTTTCACTAG

>H1000_P1_Alu_Locus_252_consensus_sequence_NA11831_hg18_chr16:52432481/2

TCAGTTGGCACTCATTTAGATTTGTTAAGGAAATATGGTTGAGGTCAAGCTACACACCTTCGTGAGTTCTTTTCTGGTCCATGAACTCTAGTTTAGCAAATTCTGGTATTTTCAAGTGTAACAGTGTATTATGTATGAATAAGAAGTGCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCCGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGTGCCTGTAGAATGTCATCAGACATCGATAGCAACTATCTAGTGCTGGTGCTGCCACTCACTAACCCTTGTAGTGCCCATGACAGACATCAGTAATTGATCATAACACTCTTTCCTGCTGAGCTAGGAGAAAGTTCAG

>H1000_P1_Alu_Locus_254_consensus_sequence_NA12043_hg18_chr10:71280181/2

GCCTCGGCCCTGTCTCTAGTGGGATGAGGATAACAATCCTCTTAAGAGACATCAGGAGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAGACATCAGGAGAGGACCTGGAGCCACACGTTAAACTGCCTGGCATGGGGTGACACTCGAGAAACAGGGTTTCTTACCCCATGGCGCATGTCTAATGCAGGGGCCTTCCAGCGGCCTCCTGCGTCTGGAGGAAGCCACCTACTGAGA

>H1000_P1_Alu_Locus_255_consensus_sequence_NA07357_hg18_chr1:20129669/70

CTATCTTGGACGCACATGTCCGAGAGACAATTGTCCAACTATAGGCCTTTGAGAATGCTAATTCTGAGTGCCAGGCGGCCATTAGACCTGTTAAAAGAAAAGCACCAAAAGACAAGGTATTAAGTCAATATATTAAAGCCTGTGATGGCATTGAAGGACATGTATACAAAGCTAACCTCCTAGGCCAGGCAATGGCAGGTTTAAAAGTTGGAAATAACACACAAAAGTTCTCAGGGTCGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCTCAGGGTCCTGTTAAAAT

>H1000_P1_Alu_Locus_258_consensus_sequence_NA18504_hg18_ chr7:18311849/50

TCTAGAACTGTTTGAATGACACATAGTTCTGTTGTACCCTTGTAGAGCACACAAAGAAACAAAGTTTCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCGGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAAGTTTCTGATCTCTGGGCAGGGGTCTAATAGATGAGAAGACAAGACATATGCATAGCACACCATGTAATATAGAGTGAGTAAAGAGTGCAGGCAGTAATTGCTTAAGGGTTTAGGAAAGGAACTTGGTACAGTGGCCTGGGCTGATAAGGTGAACCTTG

>H1000_P1_Alu_Locus_261_consensus_sequence_NA07357_hg18_ chr18:57864699/700

ATTGCATCTGTACTGAACATGTACAGACTTTCTATTCTTTCTATTATTCCCTAAACAATATAGTGTAACAATTATTTACATGGCATTTACATTTTATTAGGTATTGTAAATAATCTAGAGATGATCTAAAGAAGCAGTCCCCAACCTTTTTGGCATAAGGGAGTAGTTTCATGGAAGACAATTTTTCCACACGCCGCTGTGTATGTGGGGGTGAGGGATGGTTTCGGGATGAAACTGTTCCACCTCAGATCATCAGGCATTCGTTAGATTCTCATAAGAAGTGCACAACCGGCCGGGCGCGGTGGCTGACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGATATCGAGACCATCCCGGCTAAAACGGTGAAACCTCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAAGTGCACAACCTAGACC

>H1000_P1_Alu_Locus_262_consensus_sequence_NA11881_hg18_chr6:72311092/3

TTAAACCTCAAATTTTACAACTTTAAAATGGAGAGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGAGAGACAGATGCAGGCAAACTCTGCCTCCATTATTATTTTATTAGAAGGGTAAAATGAGATAAAGTGTATGAAGGCATTTTGTAAATCTCTGAGCACTGTGCAAATGTAAGACATTATTTTTGTACTGATACCTATTATGAGAAAAATAAAAGATTAATTCAAGACATATTGCATGGTTATGAAAAACTCTGTACTTTAAGATATTCAGTTAATTTTAAGGGTCCTCATTGCTATAGACATGAACATTTAATCAGTCACTGGAAGAAGAAAAAAAACATCCAAAAGAAACTGCCTAAGAAAAACCGATACAACAAAGTCATGCCATGTTTGCTTCACAATCTTCTTTTAGCATTCTTTCACCCTTCCTGGCTGCATGCTTTGCATACTTGGAGTTTTAAGCCATTGAAAATATGTATATTTGTTGAATGGAAATGATGCGAGAGAAATAGATGCCATTATTGTGGTTGGTAAAAATCTAGCTTAA

>H1000_P1_Alu_Locus_264_consensus_sequence_NA07346_hg18_ chr3:170957017/8

AACTCAATGACTTGGGTTCTGCCCCTATCCTTATAACCCAGTGAAGAACACAGATAAGCAAATAATTTATTGCAAATTAGGAAAACATGTTATAAAGGTAATCAACAGAAGATCATAAGAGGAGGGGTAACCTGCTTCAAAAGGGGGTCAGAGAGGATTCTGAGGAGGTGATATCTAAGTTAAGACTTGAGGCCGGGCGCGTTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGACCTGGGCGACAGAGCGAGACTCCATCTCAAAAAAAAAGAAAAAAAAAAGACTTGAGGAGGAGAGAAGGGGCCAGGAACTACAAGTGCAATTTAAGCAGAGAACCCAGGATGAGAGTTTGGTACAAAGGAGGCTGGTGTGGCTGAAGCACAGTGCAAGAAAAGAAGAGGGTGTATTAGTTTGTTTTCACACTGCTGGTAAAGACATACCCGAGACTGGGAAGAAAAAGGGATTTTATTGGACTTACAGTTCCACCTGGCTGTGGATGACTCAGAATCATGGTGGGAGGCAAAAGTCACTTCTTACATGGCGGCAGCAAGAGAAAATGAGAGAAGAAGCAAAAGTGGAAACCCCTGATAAACCCATCAGATCTCGTGAGACTTATTCACTATCACGAGAATAGCATGGGAAAGACTGGCCCACATGATTCAATTACCTCCCCCTGGGTCTCTCCCAAAACACATAGG

>H1000_P1_Alu_Locus_265_consensus_sequence_NA18563_hg18_chr13:41469560/1

ACAAGGCAAACCCAGGGCCTAGACATGAACATGGAGGTAGATGGAATTTGACATTCTGATATTAATATTAATTTATTTGGACATTTATTTTAGGGGATGAAAGGGTTCTATTATAGATAACCTATTATCACTCTGTGAAGACTTGCCTGTTGAAAACAAGTCCTGGTGATTGTGTTTTCTTTCTGTATCACAATCTAGTCAAGTGGTTAATAATCTGTACCAAACAAATAAAATAAACTAAACACATTTATTAAAATATGTTGTATTCTAAAAGCTAGGCTCATTTCCAGCATGTGGCCTATCACTGAAGCTCTGAGTTCTTAAAATCGTTGAGTTGAGAAATTTTTTTTCTGTGAAAGTGCTTTAATTCTATGAGGACACAGTAGGACTCTCCAAGGAAAGAAACTTACTAGGGAACTCTCATACCTTTACATTGATACAATCTCCCTTTTAAAAATCGTTTTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCGCTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAATCGTTTTAATTGTGGTAAGATTCACTTAACATAAAATTGACCATCTTAACCATGTTTAAGTGTATTGTGTCAAAGCCATTAAGTACATCCATATTACTGTGTAACCATCACCAACATCCACCTCCAGAACTTTTCATCTTGCAAAACTGTAACTCTTCACCCATTAAACAACAACTCCACTTCTCCCTTCTTCCAGGCCCTGGCAGCCATCATTTCTGCTTTCTGTGTCTGTGAATTTGACTACTCTAGGTACTTCATATGAATAGAATCATACAATATTTGCCCTTTTTTGATGGGCTTATTTCACTTAGCATAATGTCTTCAAGGTTCATTCCTGTTGTAGCATGAGTCTACAATCTCCTGTTTCAGTGGGTAAACAAAAAAGCAGCCCTAGTCACTTAATCTTTTTATATCCATATAATATTTTATATCAACTTACTTCAAAGGGACTCTACAAAGTTTGCCTGAGTTGTGATTTGAGTCCCCTTTAAGAGAAACCCATAATAACAAAGCAGTGGTAATGGAGGTGATGGCAGTGGTGGTGGTAGG

>H1000_P1_Alu_Locus_266_consensus_sequence_NA18577_hg18_chr5:142335179/80

TCTTAGGTACTGGGAATGATGAAGTTTACTGACTGTCGATTGGGAGATGATACACACAAGAAACATCTAAAGAACAAAGCTAAGACTAAACTTTCAGGGATCATCTTTATAGTTTGCTAAATGATCAAAGCTAAGTTGAATTAAAACTATTTATTAAGTAGCTAACTATGTGTAAGAAACAATAACCACATTCAGGTCATTTAATCTGATGGTTTTAAAACTATTAGTACAGAATATCTTTTATCAAAAATAGACAGACAGGGCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAATCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAATAGACAGACAGATAAAAATTGAATGTGAAACCCCAGTACACCAGCAAGATGAAAGCAGGGCAGCTCTGGAAGAAGCTGGGAGAAAGGTTTCTTTCACCTCAGCAACTGTAGAGTCCCAAAGATTCTTGAAACATAATTTGAAAATCACTACTGTAGACGCAGTTCTCTAGTCCTACCCCTTTTATATTAAAGCTGCAGAACCACAGGCCTAGGAGGGGTGAGCAGCTTTTCCAAGTCCATGCCGTTTAGCAGCACAAGGGAAGCAGATGCTACATCTCCTTGCTCAGTCTACCATCATT

>H1000_P1_Alu_Locus_267_consensus_sequence_NA12828_hg18_ chr14:50788750/1

TTAATGTCAAGCTACTTAAGTTTTTCTGTCCTCTATTATGATCCACAGTAAAAGTCACTaaagaaatctttccGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAA