IR24
1
IR24 ATG TGA 171 58 1039 98 93 92 37 373 120 336 417 IR64 Minghui 63 93- 11 3 Zhonghua 11 3 3 4 Substitution, no aa change Substitution, aa c hange Deletion, no aa change Insertion, no aa change Xa1 3 Nipponbare 3 3 4 Mudanjiang 8 3 3 4 238 A/T IRBB13 3 xa13 Chinsurah Boro2 (1 1484) 175 C/W; 184 F/V 85 V/A Tepa 1 184 F/V; 230 N/G; 293 C/P Chinsurah Boro2 (1 1760) Aus 274 49 S/L AC 19-1-1 3 3 10 238 A/T Long Grain (35023) 3 Kalimekri 77 -5 3 3 10 184 F/V Chinsurah Boro2 (5 0930) 184 F/V Long Grain (64950) 3 184 F/V BJ 1 Supplementary Figure 1. Sequence comparison of the resistant and susceptible alleles of the Xa13 locus from different rice lines. The black boxes, black lines and hatched boxes represent the coding regions, introns, and 5’ and 3’ untranslated regions, respectively. Translation start codon (ATG) and stop codon (TGA) are indicated only in the sequence of IR24. The figures in black (top) indicate the length (bp) of the respective regions in the sequence of the rice line IR24. Nucleotide substitutions, deletions or insertions in different rice lines are relative to the sequence of IR24. Green and red triangles indicate insertions and deletions respectively, the figures indicate the numbers of nucleotides inserted or deleted, and the triangles without a figure represent single nucleotide insertions/deletions. The position and type of amino acid change of the xa13 protein as
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336. 171. 37. 373. 120. 417. 58. Xa13. 1039. 98. 93. 92. IR24. TGA. ATG. 3. IR64. 93-11. 4. 3. 3. Zhonghua 11. 4. 4. 3. 3. 3. 3. Minghui 63. Nipponbare. Mudanjiang 8. xa13. 3. IRBB13. 238 A/T. Chinsurah Boro2 (11484). 175 C/W; 184 F/V. - PowerPoint PPT Presentation
Transcript of IR24
IR24ATG TGA
171 581039 98 93 92
37 373 120 336 417
IR64
Minghui 63
93-113
Zhonghua 113 3 4
Substitution, no aa change
Substitution, aa changeDeletion, no aa changeInsertion, no aa change
Xa13
Nipponbare3 3 4
Mudanjiang 83 3 4
238 A/TIRBB133
xa13
Chinsurah Boro2 (11484) 175 C/W; 184 F/V
85 V/ATepa 1
184 F/V; 230 N/G; 293 C/PChinsurah Boro2 (11760)
Aus 274
49 S/LAC 19-1-13 3
10
238 A/TLong Grain (35023)3
Kalimekri 77-53 3
10184 F/VChinsurah Boro2 (50930)
184 F/VLong Grain (64950)3
184 F/VBJ 1
Supplementary Figure 1. Sequence comparison of the resistant and susceptible alleles of the Xa13 locus from different rice lines. The black boxes, black lines and hatched boxes represent the coding regions, introns, and 5’ and 3’ untranslated regions, respectively. Translation start codon (ATG) and stop codon (TGA) are indicated only in the sequence of IR24. The figures in black (top) indicate the length (bp) of the respective regions in the sequence of the rice line IR24. Nucleotide substitutions, deletions or insertions in different rice lines are relative to the sequence of IR24. Green and red triangles indicate insertions and deletions respectively, the figures indicate the numbers of nucleotides inserted or deleted, and the triangles without a figure represent single nucleotide insertions/deletions. The position and type of amino acid change of the xa13 protein as compared with XA13 protein are indicated on the right side of each allele.
