生物信息学相关数据库资源介绍

刘 吉 平Reference ： www.biosino.org

生物信息学相关数据库资源 核酸及其相关数据库（序列数据库、基因组相关数

据库、核酸三维结构数据库、其他） 蛋白质相关数据库（序列数据库、蛋白质三维结构

数据库、蛋白质组数据库（二维凝胶电泳数据库）、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库）

基因或蛋白质一些特定数据库 糖类及其相关数据库 蛋白质翻译后修饰相关数据库 基因表达数据库 人类基因突变及疾病相关数据库 进化相关数据库及资源专利数据库 资源目录服务器或网页

核酸及其相关数据库 核酸序列数据库 BIOSINO 我国的核酸序列公共数据库 EMBL - EMBL Nucleotide sequence database (EBI)

* GenBank - GenBank Nucleotide Sequence databas

e (NCBI) * DDBJ - DNA Data Bank of Japan * dbEST - Database of Expressed Sequence Tags 

(NCBI) dbSTS - Database of Sequence Tagged Sites (NCB

I)

2. 基因组及相关数据库 Genomic Databases

GenomeWeb(HGMP) - A catalogue of useful Web sites for Genomics with a set of collections of genome databases 

GSDB - Genome Sequence database (NCGR)

GOLD - Genomes On-line db 一些数据库的直接链接

3. 核酸三维结构数据库

NDB - Nucleic Acid Databank (3D structures)

BNASDB - Nucleic acid structure db from University of Pune

4. 其他 AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA seque

nces db Codon Usage Db  - The frequency of codon use in eac

h organism is made searchable through this World Wide Web site.

EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db

其它 PlantCARE - Plant cis-acting regulatory DNA elem

ents db sRNA db - Small RNA db ssu rRNA - Small ribosomal subunit db lsu rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of B

ayreuth uRNADB - uRNA db

其他 RNA editing - RNA editing site RNAmod db - RNA modification db TelDB - Multimedia Telomere Resourc

e TRADAT - TRAnscription Databases a

nd Analysis Tools Subviral RNA db - Small circular RNAs

db (viroid and viroid-like)

Transgenics

Cre Transgenic Database - Cre transgenic mouse lines

Transgenic/Targeted Mutation Database - Information on transgenic animals and targeted mutations

1. 蛋白质序列和相关数据库 SWISS-PROT - SWISS-PROT annotat

ed protein sequence db PIR-international -The Protein Informat

ion Resource (protein sequence) MIPS - Martinsried institute for protein

sequence and homology data and yeast genome information

蛋白质及其相关数据库 PROSITE - PROSITE dictionary of protein sites and patterns InterPro - Integrated Resources of Proteins Domains and Funct

ional Sites BLOCKS - BLOCKS db DOMO - Protein domain db (Automatically generated) Pfam - Protein families db (HMM derived) [Mirror at Sanger] PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of SWIS

S-PROT proteins SBASE - SBASE domain db (Protein domain sequence library) SMART - Protein signalling and extracellular domain patterns

(Simple Modular Architecture Research Tool) ProClass - Protein sequence alignments and curation of protei

n families

. 蛋白质三维结构和相关数据库

PDB - Protein Data Bank [Mirrors in EBI] BioMagResBank - Repository for data on proteins, peptides,

and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein

models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA |

Israel | Singapore | Australia] Mol_R_Us - Molecules R Us, browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (I

CRF) protein domain server PRESAGE - Collaborative resource for structural genomics

蛋白质三维结构和相关数据库 SBASE - SBASE domain db (Protein domain seq

uence library) SMART - Protein signalling and extracellular do

main patterns (Simple Modular Architecture Research Tool)

ProClass - Protein sequence alignments and curation of protein families

Kabat - Kabat db of protein of immunological interest

PMD - Protein Mutant db

蛋白质二维凝胶电泳数据库

WORLD-2DPAGE - A complete index of 2D-PAGE db and servers

Phoretix links - Phoretix page of links to 2D gel db

信号传导及蛋白质 - 蛋白质相互作用相关数据库

DIP - Db of Interacting Proteins INTERACT - Protein-Protein interaction db ProNet - Protein-Protein interaction db 　 CANSITE - Signal Transduction's Web SPAD - Signaling pathway db CSNDB - Cell Signaling Networks db

DNA 和蛋白质相互作用数据库　

DPInteract - DNA-Proteins interactions db

特定基因或蛋白质的数据库 AAA - AAA family of ATPases server

Acetylcholinesterases ALDH - Aldehyde dehydrogenase gene sup

erfamily db Aminoacyl-tRNA synthetases

in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT

AARSDB - Aminoacyl-tRNA synthetases db Allergens in SWISS-PROT - Nomenclature

and index of allergens in SWISS-PROT

特定基因或蛋白质的数据库 AMSDb - Antimicrobial sequences db Antibody resource page - Links to antibody r

elated Web resources Australian venom and toxin db Bacillus thuringiensis toxin specificity db TFII - Basal transcription factors Blood group antigens in SWISS-PROT BCGD - Breast cancer genes db from MBCR BRENDA - Db of enzyme functional data

特定基因或蛋白质的数据库 EF-hand CaBP - EF-hand calcium-binding p

roteins db CAZy - Carbohydrate-Active enZYmes Web

site CBS domain - Cystathionine Beta Synthase

domain WWW page CD antigens in SWISS-PROT - Nomenclatur

e for surface proteins of human leucocytes (CD)

特定基因或蛋白质的数据库 CD antigens in PROW - Database on i

nformation about CD antigens Chaperonin - Information on GroEL an

d GroES chaperonins Conotoxins - Information on conotoxin

s from a Web site on cone shells 。。 etc 。。

糖类相关数据库 CarbBank - Complex Carbohydrate Structur

e Database GlycoSuiteDB - Db of glycan structures

TGN - The Glycoscience Network FCCA - Forum Carbohydrates Coming of Ag

e CARBHYD - Carbohydrate information WW

W sites Monosacharide browser - Space filling Fisch

er projection for monosaccharides 　

蛋白质翻译后修饰相关数据库 O-GlycBase - O-glycosylated proteins

db PhosphoBase - Phosphorylation sites

db RESID - Db of Amino Acid Modificatio

ns

　基因表达数据库 ASDB - Protein products and expression patterns of

alternatively-spliced genes Axeldb - Gene expression in Xenopus BodyMap - Human and mouse gene expression dat

a EpoDB - Genes expressed in vertebrate RBC FlyView - Drosophila development and genetics Gene Expression Database (GXD) - Mouse gene e

xpression and genomics Kidney Development Database - Kidney developme

nt and gene expression

基因表达数据库 MAGEST - Ascidian (Halocynthia roretzi) gene

expression patterns Mouse Atlas and Gene Expression Database -

Spatially-mapped gene expression data PEDB - Normal and aberrant prostate gene exp

ression Tooth Development Database - Gene expressi

on in dental tissue TRIPLES - TRansposon-Insertion Phenotypes,

Localization and Expression in Saccharomyces

人类基因突变及疾病相关数据库 HMGD - Human Gene Mutation db SVD - Se

quence variation db HGBASE - Human Genic Bi-Allelic Sequence

s db The SNP consortium dbSNP - Human single nucleotide polymorphi

sm (SNP) db List of mutation databases from OMIM

List of mutation databases from IMT (Finland)

人类基因突变及疾病相关数据库　

ADB - Albinism db (Mutations in human genes causing albinism) Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II)

AR mutations - Human androgen receptor mutation db

Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobio

pterin deficiencies BLMbase - Human BLM mutation db (Bloom snyd

rom)

人类基因突变及疾病相关数据库 BTKbase - Human BTK mutation db (X-linked a

gammaglobulinemia) CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collag

en mutation db CFTR mutation - Human cystic fibrosis mutatio

n db (CFTR) EMD db - Human Emerin (EMD) mutation db

(Emery-Dreifuss muscular dystrophy) KMeyeDB - Eye disease genes db

人类基因突变及疾病相关数据库 FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db

(Haemophilia A) HAeMB - Human Factor IX mutation db (Haem

ophilia B) FBN1 mutation - Human fibrillin 1 mutation db

(Marfan syndrome) G6PD - Human G6PD deficiency resource Galt mutation - Human galactose-1-phosphate

uridylyltransferase mutation db (Galactosemia)

人类基因突变及疾病相关数据库 HEXAdb - Human Hexosaminidase A mutation d

b (Tay-sachs disease) IL2RGbase - Human IL2RG (Interleukin-2 recept

or gamma) mutation db (X-SCID) L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Fa

milial hypercholesterolemia) LQTSdb - Long QT syndrome db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db

人类基因突变及疾病相关数据库 Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OTCase - Human ornithine transcarbamylase (OTC

ase) website Cytochrome P450 alleles nomenclature p53 mutation db - University of Tokyo p53 mutation

db Germline p53 mutation db - University of Prague db

of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH)

mutation db

人类基因突变及疾病相关数据库 PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated p

rotein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Infor

mation on Retinal genes, proteins and diseases

人类基因突变及疾病相关数据库

TSC - TSC (TSC1/TSC2) variation db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS)

db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vW

F) mutation db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db X-ALD mutation - Human ABCD1 mutation db 

进化相关数据库及资源 Clusters of Orthologous Groups (COG) - Ph

ylogenetic classification of proteins from 21 complete genomes

XREFdb - Cross-referencing of model organism genetics with mammalian phenotypes 

TreeBASE - Relational db of phylogenetic information

The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms

　专利数据库 DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents fr

om the USDA USPTO patent db - USA Patent and Trademark

Office patent db Esp@cenet - Patent information database from t

he European Patent Office (worldwide coverage) The Delphion Intellectual Property Network (IPN) 

for searching, viewing, and analyzing patent documents.

　资源目录服务器或网页

BioCatalog - The BioCatalog at EBI Yellow BAGI - Bio Access Guide to the Inter

net at Houston University Software library from Genamics.com DBCAT - Databases catalog at INFOBIOGE

N MBDL - Molecular Biology Database List 　 Amos' WWW links page  Nucleic Acids Research database issue

Human CEPH-genotype database CEPH home page - a research laboratory whic

h constructs maps of the human genome GeneMap'99 - A Gene Map of the Human Gen

ome (NCBI) OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge bas

e GDB - Human genes and genomic maps GeneCards - Db integrating information on hum

an genes

Human UDB - Unified db for Human genome mapping Ensembl - Human genome annotations site UCSC human genome working draft TIGR HGI - TIGR Human Gene Index Human BAC Ends Database - Non-redundant hu

man BAC end sequences Hs UniGene - Human transcripts in GenBank (ES

T clusters) STACK - Sequence Tag Alignment and Consensu

s Knowledgebase (Db of consensus human ESTs)

Human Allgenes.org - Human predicted gene index/c

atalog GenLink - Human genetics resource GENOTK - Human cDNA db HUGE - Human Unidentified Gene-Encoded l

arge proteins cDNA (KIAA...) CGAP - Cancer Genome Anatomy Project SCDb - Stem cell db

Human HuGeMap - Human genome genetic a

nd physical map data G3-RH - Stanford G3 and TNG radiati

on hybrid maps GB4-RH - Genebridge4 (GB4) human

radiation hybrid maps Radiation Hybrid Database - Radiation

hybrid map data

　 Human chromosome 1~8

Chr1 - Human chromosome 1 at Rockefeller University [Mirror at EBI]

Chr3 - Human chromosome 3 db at the University of Texas Health Science Center

Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children

Chr8 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 8

Human chromosome9~11

Chr9 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 9

Chr9 - Human chromosome 9 db Chr10 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 10 GTC Chr10 data - Human chromosome 10 data

from Genome Therapeutics Corporation Chr11 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 11 11DB - Human chromosome 11 db at Imperial

College (U.K.)

Human chromosome12~16

Chr12 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 12

Chr13 - Human chromosome 13 db at Columbia Chr14 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 14 Chr15 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 15 Chr15 UBC - Human chromosome 15 WWW

page at UBC Chr16 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 16

Human chromosome16~19

Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory

Chr16 TIGR - Human chromosome 16 db at TIGR Chr17 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 17 Chr18 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston

Children's Hospital Chr19 SWISS-PROT list - Links to SWISS-PROT

entries from human chromosome 19

Human chromosome20~22

Chr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20

Chr21 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 21

Chr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan)

Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute

Chr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22

Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22

Human chromosomeX~Y ChrX SWISS-PROT list - Links to SWISS-P

ROT entries from human chromosome X IXDB - Integrated X chromosome db ChrY SWISS-PROT list - Links to SWISS-P

ROT entries from human chromosome Y 　 DRESH - Human cDNA clones homologous

to Drosophila mutant genes

Vertebrates OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes Mouse

Genome Database (MGD))[Mirrors in Australia | UK | Japan]

TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST

clusters) RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clus

ters)

Vertebrates 　 BovBASE - Bovine genome db (in UK) BOVMAP - Bovine genome db (in France) Ark-Cat - Cat genome db HorseBASE - Horse genome db DGP - Dog Genome Project PiGBASE - Pig genome db SheepBASE - Sheep genome db (also known as

SheepMap) [Mirror in UK] MIS - Mendelian Inheritance in Sheep 　 ChickGBASE - Chicken genome db 　

Vertebrates Fugu - HGMP Resource Centre Fugu Projec

t (Fugu rubripes) Medakafish - Mekada fish (Oryzias latipes) s

erver Ark-Tilapia - Tilapia mossambica genome d

b The fish net - Zebrafish server FishBase - Global information system on fis

hes

Mitochondrion and chloroplast

GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitocho

ndrion db (mitochondrial nuclear genes) MITOMAP - Human mitochondrial genome db MmtDB - Metazoa mitochondrial DNA variants db MitBASE - Integrated mitochondrial DNA db MitBASE-Pilot - Db of S.cerevisiae nuclear genes

involved in mitochondrial biogenesis HvrBase - Primates mtDNA control region seque

nces compilation

Mitochondrion and chloroplast

MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)

MITOP - Mitochondrial proteins, genes and diseases

AMmtDB - Metazoan mitochondrial DNA sequences 　

Insects Drosophila SWISS-PROT list - Links to Drosop

hila SWISS-PROT entries FlyBase - Drosophila genetic and molecular db

[Mirror at EBI] FlyView - Drosophila image db GIFTS - Gene Interactions in the Fly Trans-Wor

ld Server FlyNets - Db of molecular interactions in Droso

phila melanogaster SOS-DGBD - Db of Drosophila DNA sequence

s annotated with regulatory binding sites Mosquito Genomics

Invertebrates WormBase - C.elegans db [Mirror at Sanger] C.elegans WWW server - at University of Texas S

outhwestern ACeDb - Caenorhabditis elegans db C.elegans Mitochondrial Directory - Data on C.ele

gans genes for mitochondrial proteins C.elegans EST - C.elegans EST db from Japan (Y

uji Kohara's group) C.elegans SWISS-PROT list - Links to C.elegans

SWISS-PROT entries WormPep - C.elegans proteins db WormPD - C.elegans protein db 　

Invertebrates Dictystelium Genome Sequencing project at BCM Dictyostelium discoideum genome project at IENA DictyDb - Dictyostelium discoideum db Dicty_cDB - Dictyostelium discoideum cDNA proje

ct 　 Cone shells Web site 　 Parasite genomes db and resources Parasite genomes WWW site 　 PlasmoDB - P.falciparum genome db

Invertebrates Malaria - WHO - Malaria db (from WH

O) P.falciparum Sanger - P.falciparum ge

nome project at Sanger PFDB - Plasmodium falciparum Geno

me db P.falciparum - Plasmodium falciparum

Gene Sequence Tag project

Invertebrates MAD - Malaria Antigen db Malaria parasite metabolic pathways

　 LGN - Leishmania Genome Network Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequenc

e db

Plants

NAL - AGIS - Access to many plant genome databases at the National Agricultural Library

Demeter's genomes - Access to many plant genome databases at the USDA-ARS

Mendel - Plant gene nomenclature database from CPGN

AtDB - Arabidopsis thaliana genome database TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR AtGI - TIGR Arabidopsis thaliana Gene Index AGR - Arabidopsis Genome Resource 

Plants BeanGenes - Beans genome db BeanRef - Beans genome db and other resources ChlamyDB - Chlamydomonas reinhardtii genome

db CropNet - Genome mapping in crop plants CottonDB - Cotton genome db MaizeDb - Maize genome db INRA Maize - INRA Maize genome db ZmDB - Maize genome database Pisum sativum (pea) web site

Plants-Rice RGP - Rice Genome Research Program RiceGenes Rice-research.org - Monsanto rice genome

site TIGR OsGI - TIGR Rice Gene Index TIGR GmGI - TIGR Soybean Gene Index Snapdragon (A.majus) web site SorghumDB - Sorghum genome db SoyBase - Soybean genome db

Plants SoyBase metabolic db - Metabolic sub

set of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db

Fungi FGSC - Fungal Genetics Stock Center FGR - Fungal Genome Resource 　 Yeast SWISS-PROT list - Links to S.cerevisiae WW

W sites and to SWISS-PROT entries SGD - Saccharomyces genome db YPD - Yeast protein db MitBASE-Pilot - Db of S.cerevisiae nuclear genes in

volved in mitochondrial biogenesis Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db PathCalling - Yeast protein-protein interaction db

Fungi 　 Aspergillus web site C.albicans SWISS-PROT list - Links to C.albicans

WWW sites and to SWISS-PROT entries Candida albicans - Candida albicans server at the

Univ. of Minnesota NGP - Neurospora crassa genome project PC - Pneumocystis carinii genome project S.pombe SWISS-PROT list - Links to S.pombe WW

W sites and to SWISS-PROT entries S.pombe NIH - Fission yeast (S.pombe) server at th

e NIH

Fungi Phycomyces Web site - Resource site

for scientists working on Phycomyces 　 EMGlib - Completely sequenced bacte

rial genomes and the yeast genome

Bacteria ICB - Identification and Classification of Bacteria

WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomen

clature

MDB - TIGR Microbial db < A>- Genome information broker for Microbial

genomes HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bact

erial genomes - from Ian Paulsen

BPGD - Bacterial polysaccharide gene db

Bacteria Bacterial quorum sensing MicrobeWorld - Educational site on microbes 　 E.coli SWISS-PROT list - Links to E.coli WWW site

s and to SWISS-PROT entries EcoWeb / EcoGene - Very comprehensive E.coli d

b ECCE - E.coli Cell Envelope Protein Data Collectio

n ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabo

lism

Bacteria GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Insitute ECGC - E.coli Genome Center at Wisconsin Uni

versity DDBJ E.coli - E.coli home page at DDBJ 　 B.subtilis SWISS-PROT list - Links to B.subtilis

WWW sites and to SWISS-PROT entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db [Mirr

or in Japan]

Bacteria Micado - Microbial advanced db (B.subtilis + E.col

i) (previously known as MadBase) BSORF - Japanese server on B.subtilis 　 A.actinomycetemcomitans - Actinobacillus actino

mycetemcomitans strain HK1651 genome project B.stearothermophilus - Bacillus stearothermophilu

s strain 10 genome project B.pertussis - Bordetella pertussis genome WWW

site BbDB - TIGR Borrelia burgdorferi genome db

Bacteria iBGD - Integrated Buchnera genome db B.cepacia - Burkholderia cepacia genome project Chlamydia - Chlamydia pneumoniae and trachom

atis C.muridarum - TIGR Chlamydia muridarum strain

MoPn genome db C.pneumoniae AR39 - TIGR Chlamydia pneumon

iae strain AR39 genome db C.pneumoniae J138 - Japanese Chlamydia pneu

moniae strain J138 genome db

Bacteria C.acetobutylicum - GTC Clostridium acetobutylicum

strain ATCC 824 data C.jejuni - Campylobacter jejuni strain NCTC 11168

genome WWW site C.hutchinsonii - Cytophaga hutchinsonii genome pr

oject DrDB - TIGR Deinococcus radiodurans strain R1 ge

nome db D.hafniense - Desulfitobacterium hafniense genome

project E.faecium - Enterococcus faecium genome project

Bacteria F.acidarmanus - Ferroplasma acidarmanus gen

ome project F.tularensis - Francisella tularensis genome W

WW site H.influenzae SWISS-PROT list - Links to H.influ

enzae WWW sites and to SWISS-PROT entries HiDB - TIGR H.influenzae genome db HIDC - H.influenzae db collection H.pylori SWISS-PROT list - Links to H.pylori W

WW sites and to SWISS-PROT entries

Bacteria HpDB - TIGR Helicobacter pylori strain 26695 genome db H.pylori J99 - Astra Helicobacter pylori strain J99 genome db PyloriGene - Helicobacter pylori genmoic db MC-1 - Magnetococcus MC-1 genome project M.magnetotacticum - Magnetospirillum magnetotacticum genome p

roject MycDB - Mycobacterium db M.leprae at GTC - GTC Mycobacterium leprae data M.leprae at Sanger - Sanger Centre M.leprae genome project TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - TIGR Mycobacterium tuberculosis strain Oshkosh genome

db M.tuberculosis at GTC - GTC Mycobacterium tuberculosis data

Bacteria M.tuberculosis at Sanger - Sanger Centre M.tu

berculosis H37Rv genome project M.tuberculosis secreted proteins M.tuberculosis structural genomics consortium M.genitalium SWISS-PROT list - Links to M.ge

nitalium SWISS-PROT entries MgDB - TIGR Mycoplasma genitalium genome

db M.pneumoniae - Mycoplasma pneumoniae gen

ome project

Bacteria N.meningitidis A - Sanger Centre Neisseria meni

ngitidis serogroup A strain Z2491 genome project

N.meningitidis B - TIGR Neisseria meningitidis serogroup B strain MC58 genome db

N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project

N.europaea - Nitrosomonas europaea genome project

N.punctiforme - Nostoc punctiforme genome project

Bacteria P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome

project P.aeruginosa db - Pseudomonas aeruginosa genome db P.fluorescens - Pseudomonas fluorescens genome project Rhizobium pNGR234a SWISS-PROT list - Links to Rhizob

ium plasmid pNGR234a SWISS-PROT entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.sphaeroides - Rhodobacter sphaeroides genome project

Bacteria R.palustris - Rhodopseudomonas palustris genom

e project R.prowazekii SWISS-PROT list - Links to prowaze

kii SWISS-PROT entries R.prowazekii - Rickettsia prowazekii strain Madrid

E genome project S.typhimurium SWISS-PROT list - Links to S.typhi

murium SWISS-PROT entries RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project

Bacteria S.aromaticivorans - Sphingomonas aromaticivora

ns genome project S.aureus - Staphylococcus aureus strain NCTC 8

325 genome project S.mutans - Streptococcus mutans strain UAB159

genome project S.pyogenes - Streptococcus pyogenes strain M1

genome project PCC 6803 SWISS-PROT list - Links to Synechoc

ystis PCC 6803 SWISS-PROT entries CyanoBase - Synechocystis PCC 6803 db

Bacteria Synechococcus - Marine synechococcus genome proj

ect T.fusca - Thermomonospora fusca genome project TmDB - TIGR Thermotoga maritima genome db TpDB - TIGR Treponema pallidum genome db T.erythraeum - Trichodesmium erythraeum genome p

roject U.urealyticum - Ureaplasma urealyticum genome WW

W site VcDB - TIGR Vibrio cholerae genome db X.citri - Xanthomonas cititi genome WWW site

Bacteria X.fastidiosa - Xylella fastidiosa genome WW

W site X.fastidiosa at DOE - DOE Xylella fastidiosa

genome project Y.pestis - Yersinia pestis genome WWW sit

e Phytophthora Genome Initiative Database -

Oomycete sequences and genetic maps

Archaea A.pernix - Aeropyrum pernix K1 genome db AfDB - TIGR Archaeoglobus fulgidus genome db Halobacterium NRC-1 - Halobacterium strain NR

C-1 genome project M.thermoautotrophicum - Methanobacterium the

rmoautotrophicum genome db M.jannaschii SWISS-PROT list - Links to M.jann

aschii SWISS-PROT entries MjDB - TIGR Methanococcus jannaschii genome

db MjFdb - Methanococcus jannaschii functions db

Archaea M.barkeri - Methanosarcina barkeri genome

project P.abyssi - Pyrococcus abyssi genome proje

ct and db P.horikoshii - Pyrococcus horikoshii OT3 db SGP - Sulfolobus solfataricus strain P2 gen

ome project T.acidophilum - Thermoplasma acidophilum

genome project

Viruses All the virology on the WWW - links to virology WW

W servers by David M. Sander ICTVdB - Universal virus taxonomy db AVIS - Animal Virus Information System Plants Viruses Online - Information on plant viruses HIV - HIV and related species db HPV - Human papillomaviruses db Influenza sequence db Picornavirus - Picornavirus home page and access

to db Tobamoviruses